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[BUG] - descriptive title... #217

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benjowen7 opened this issue Nov 6, 2024 · 0 comments
Open

[BUG] - descriptive title... #217

benjowen7 opened this issue Nov 6, 2024 · 0 comments
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probable bug Marks bug reports where the reported issue has not yet been confirmed/reproduced

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@benjowen7
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Bug description

A concise description of the bug. Include information on what is happening, when it occurs (every time, occasionally, or randomly), and any error messages or unexpected behavior.
Every new import from MassHunter of an MGF or a CEF fails. No software has changed, but previous MGF and CEF still open and work.

Expected behavior

A clear and concise description of what you expected to happen.

Steps To Reproduce

List the steps needed to reproduce the bug. Be as detailed as possible (e.g. include all parameters) to help the development team replicate the issue.
Selecting Import and desired file (regardless of how many compounds, tried a file with 1, 7 and 40 compounds) it puts out a failure report.

Screenshots and Log Files

Please upload screenshots of any errors and include log output or console output. Log can be copied from the graphical user interface using the log button.

Error when importing data! Cause: java.lang.Exception: java.lang.Exception: Cannot parse file 'GSK total.cef'
java.lang.Exception: java.lang.Exception: Cannot parse file 'GSK total.cef'
at de.unijena.bioinf.ms.nightsky.sdk.jjobs.SseProgressJJob.updateAndCheckIfDone(SseProgressJJob.java:128)
at de.unijena.bioinf.ms.nightsky.sdk.jjobs.SseProgressJJob$1.onNext(SseProgressJJob.java:75)
at de.unijena.bioinf.ms.nightsky.sdk.jjobs.SseProgressJJob$1.onNext(SseProgressJJob.java:64)
at de.unijena.bioinf.sse.FluxToFlowBroadcast.lambda$onNext$7(FluxToFlowBroadcast.java:103)
at java.base/java.lang.Iterable.forEach(Unknown Source)
at de.unijena.bioinf.sse.FluxToFlowBroadcast.onNext(FluxToFlowBroadcast.java:99)
at de.unijena.bioinf.ms.nightsky.sdk.NightSkyClient.lambda$enableEventListening$3(NightSkyClient.java:198)
at reactor.core.publisher.LambdaSubscriber.onNext(LambdaSubscriber.java:160)
at reactor.core.publisher.FluxPublishOn$PublishOnSubscriber.runAsync(FluxPublishOn.java:446)
at reactor.core.publisher.FluxPublishOn$PublishOnSubscriber.run(FluxPublishOn.java:533)
at reactor.core.scheduler.WorkerTask.call(WorkerTask.java:84)
at reactor.core.scheduler.WorkerTask.call(WorkerTask.java:37)
at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.base/java.lang.Thread.run(Unknown Source)

Example data

Include any additional information that might help the development team to reproduce the bug, in particular relevant project files or datasets, that demonstrate the problem you are reporting.

System Info (please complete the following information):

  • OS and Version: [e.g. Windows 11]
  • SIRIUS Version [e.g. 6.0.5]
  • Hardware [Hardware specifications, e.g. CPU, RAM]

Workarounds

If you have found any temporary solutions or workarounds to the bug, please describe them here.

@benjowen7 benjowen7 added the probable bug Marks bug reports where the reported issue has not yet been confirmed/reproduced label Nov 6, 2024
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