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A concise description of the bug. Include information on what is happening, when it occurs (every time, occasionally, or randomly), and any error messages or unexpected behavior.
Every new import from MassHunter of an MGF or a CEF fails. No software has changed, but previous MGF and CEF still open and work.
Expected behavior
A clear and concise description of what you expected to happen.
Steps To Reproduce
List the steps needed to reproduce the bug. Be as detailed as possible (e.g. include all parameters) to help the development team replicate the issue.
Selecting Import and desired file (regardless of how many compounds, tried a file with 1, 7 and 40 compounds) it puts out a failure report.
Screenshots and Log Files
Please upload screenshots of any errors and include log output or console output. Log can be copied from the graphical user interface using the log button.
Error when importing data! Cause: java.lang.Exception: java.lang.Exception: Cannot parse file 'GSK total.cef'
java.lang.Exception: java.lang.Exception: Cannot parse file 'GSK total.cef'
at de.unijena.bioinf.ms.nightsky.sdk.jjobs.SseProgressJJob.updateAndCheckIfDone(SseProgressJJob.java:128)
at de.unijena.bioinf.ms.nightsky.sdk.jjobs.SseProgressJJob$1.onNext(SseProgressJJob.java:75)
at de.unijena.bioinf.ms.nightsky.sdk.jjobs.SseProgressJJob$1.onNext(SseProgressJJob.java:64)
at de.unijena.bioinf.sse.FluxToFlowBroadcast.lambda$onNext$7(FluxToFlowBroadcast.java:103)
at java.base/java.lang.Iterable.forEach(Unknown Source)
at de.unijena.bioinf.sse.FluxToFlowBroadcast.onNext(FluxToFlowBroadcast.java:99)
at de.unijena.bioinf.ms.nightsky.sdk.NightSkyClient.lambda$enableEventListening$3(NightSkyClient.java:198)
at reactor.core.publisher.LambdaSubscriber.onNext(LambdaSubscriber.java:160)
at reactor.core.publisher.FluxPublishOn$PublishOnSubscriber.runAsync(FluxPublishOn.java:446)
at reactor.core.publisher.FluxPublishOn$PublishOnSubscriber.run(FluxPublishOn.java:533)
at reactor.core.scheduler.WorkerTask.call(WorkerTask.java:84)
at reactor.core.scheduler.WorkerTask.call(WorkerTask.java:37)
at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.base/java.lang.Thread.run(Unknown Source)
Example data
Include any additional information that might help the development team to reproduce the bug, in particular relevant project files or datasets, that demonstrate the problem you are reporting.
System Info (please complete the following information):
OS and Version: [e.g. Windows 11]
SIRIUS Version [e.g. 6.0.5]
Hardware [Hardware specifications, e.g. CPU, RAM]
Workarounds
If you have found any temporary solutions or workarounds to the bug, please describe them here.
The text was updated successfully, but these errors were encountered:
Bug description
Expected behavior
Steps To Reproduce
Screenshots and Log Files
Error when importing data! Cause: java.lang.Exception: java.lang.Exception: Cannot parse file 'GSK total.cef'
java.lang.Exception: java.lang.Exception: Cannot parse file 'GSK total.cef'
at de.unijena.bioinf.ms.nightsky.sdk.jjobs.SseProgressJJob.updateAndCheckIfDone(SseProgressJJob.java:128)
at de.unijena.bioinf.ms.nightsky.sdk.jjobs.SseProgressJJob$1.onNext(SseProgressJJob.java:75)
at de.unijena.bioinf.ms.nightsky.sdk.jjobs.SseProgressJJob$1.onNext(SseProgressJJob.java:64)
at de.unijena.bioinf.sse.FluxToFlowBroadcast.lambda$onNext$7(FluxToFlowBroadcast.java:103)
at java.base/java.lang.Iterable.forEach(Unknown Source)
at de.unijena.bioinf.sse.FluxToFlowBroadcast.onNext(FluxToFlowBroadcast.java:99)
at de.unijena.bioinf.ms.nightsky.sdk.NightSkyClient.lambda$enableEventListening$3(NightSkyClient.java:198)
at reactor.core.publisher.LambdaSubscriber.onNext(LambdaSubscriber.java:160)
at reactor.core.publisher.FluxPublishOn$PublishOnSubscriber.runAsync(FluxPublishOn.java:446)
at reactor.core.publisher.FluxPublishOn$PublishOnSubscriber.run(FluxPublishOn.java:533)
at reactor.core.scheduler.WorkerTask.call(WorkerTask.java:84)
at reactor.core.scheduler.WorkerTask.call(WorkerTask.java:37)
at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.base/java.lang.Thread.run(Unknown Source)
Example data
System Info (please complete the following information):
Workarounds
The text was updated successfully, but these errors were encountered: