pyproject.toml

[build-system]
requires = ["setuptools >= 61.0"]
build-backend = "setuptools.build_meta"

[project]
name = "tiledbsoma-ml"
dynamic = ["version"]
dependencies = [
    "attrs>=22.2",
    "tiledbsoma>=1.9.0",
    "torch>=2.0",
    "torchdata<=0.9",
    "numpy",
    "numba",
    "pandas",
    "pyarrow",
    "scipy"
]
requires-python = ">= 3.9"
description = "Machine learning tools for use with tiledbsoma"
readme = "README.md"
authors = [
    {name = "TileDB, Inc.", email = "help@tiledb.io"},
    {name = "The Chan Zuckerberg Initiative Foundation", email = "soma@chanzuckerberg.com" },
]
maintainers = [
    {name = "TileDB, Inc.", email="help@tiledb.io"},
]

classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Developers",
    "Intended Audience :: Information Technology",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: MIT License",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "Operating System :: Unix",
    "Operating System :: POSIX :: Linux",
    "Operating System :: MacOS :: MacOS X",
    "Operating System :: Microsoft :: Windows",
    "Programming Language :: Python",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
]

[project.urls]
Repository = "https://github.com/TileDB-Inc/TileDB-SOMA-ML.git"
Issues = "https://github.com/TileDB-Inc/TileDB-SOMA-ML/issues"
Changelog = "https://github.com/TileDB-Inc/TileDB-SOMA-ML/blob/main/CHANGELOG.md"

[tool.setuptools.dynamic]
version = {attr = "tiledbsoma_ml.__version__"}

[tool.setuptools.package-data]
"tiledbsoma_ml" = ["py.typed"]

[tool.mypy]
show_error_codes = true
ignore_missing_imports = true
warn_unreachable = true
strict = true
python_version = '3.11'
plugins = "numpy.typing.mypy_plugin"

[tool.ruff]
lint.select = ["E", "F", "B", "I"]
lint.ignore = ["E501", "B905"]  # line too long, zip without explicit `strict`
lint.extend-select = ["I001"]  # unsorted-imports
fix = true
target-version = "py311"
line-length = 120