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Number all uniprot rhea examples #106

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Oct 31, 2024
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Number all uniprot rhea examples #106

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8be01e1
Number rhea examples
JervenBolleman Oct 29, 2024
053281f
UniProt: number all examples
JervenBolleman Oct 29, 2024
582bf75
UniProt: given the numbers for identity change the ttl
JervenBolleman Oct 31, 2024
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2 changes: 1 addition & 1 deletion examples/Rhea/draft_human_metabolome.ttl → examples/Rhea/19_draft_human_metabolome.ttl
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@prefix sh: <http://www.w3.org/ns/shacl#> .
@prefix spex:<https://purl.expasy.org/sparql-examples/ontology#> .

ex:draft_human_metabolome a sh:SPARQLExecutable,
ex:19_draft_human_metabolome a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Generate a draft human metabolome"@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...hea/search_chemical_names_in_japanese.ttl → .../20_search_chemical_names_in_japanese.ttl
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@prefix sh: <http://www.w3.org/ns/shacl#> .
@prefix spex: <https://purl.expasy.org/sparql-examples/ontology#> .

ex:search_chemical_names_in_japanese a sh:SPARQLExecutable,
ex:20_search_chemical_names_in_japanese a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Search for Chemical names starting in Japanese, translated to english using allie"@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...niProt/uniprot_organelles_or_plasmids.ttl → ...ot/100_uniprot_organelles_or_plasmids.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:uniprot_organelles_or_plasmids a sh:SPARQLExecutable,
ex:100_uniprot_organelles_or_plasmids a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "List the proteins encoded by a gene that is located in an organelle other than the nucleus, or on a plasmid rather than a chromosome. In these cases the gene location is stored with encodedIn properties. Note that if a plasmid has several names, they are listed as multiple <em>rdfs:label</em> properties."^^rdf:HTML ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...es/UniProt/uniprot_potential_isoforms.ttl → ...niProt/101_uniprot_potential_isoforms.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:uniprot_potential_isoforms a sh:SPARQLExecutable,
ex:101_uniprot_potential_isoforms a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "List all human UniProtKB entries and their computationaly mapped potential isoforms."^^rdf:HTML ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...les/UniProt/uniprot_primary_accession.ttl → ...UniProt/102_uniprot_primary_accession.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:uniprot_primary_accession a sh:SPARQLExecutable,
ex:102_uniprot_primary_accession a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Extracting an UniProtKB primary accession from our IRIs. Is done with a bit of string manipulation. While UniProt primary accession are unique within UniProtKB they may be reused by accident or itentionally by other data sources. If we provided them as strings (not IRI) and if you used them in a query that way, you might accidentaly retrieve completely wrong records."@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...rot/uniprot_proteome_location_of_gene.ttl → ...103_uniprot_proteome_location_of_gene.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:uniprot_proteome_location_of_gene a sh:SPARQLExecutable,
ex:103_uniprot_proteome_location_of_gene a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "List UniProtKB proteins with genetic replicon that they are encoded on using the Proteome data."@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion .../uniprot_recomended_protein_full_name.ttl → ..._uniprot_recomended_protein_full_name.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:uniprot_recomended_protein_full_name a sh:SPARQLExecutable,
ex:104_uniprot_recomended_protein_full_name a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "The recommended protein full names for UniProtKB entries"@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...uniprot_recomended_protein_short_name.ttl → ...uniprot_recomended_protein_short_name.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:uniprot_recomended_protein_short_name a sh:SPARQLExecutable,
ex:105_uniprot_recomended_protein_short_name a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "The recommended protein short names for UniProtKB entries"@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion examples/UniProt/uniprot_reviewed_or_not.ttl → ...s/UniProt/106_uniprot_reviewed_or_not.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:uniprot_reviewed_or_not a sh:SPARQLExecutable,
ex:106_uniprot_reviewed_or_not a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "List all UniProtKB proteins and if they are reviewed (Swiss-Prot) or unreviewed (TrEMBL)"@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...nd_mark_which_is_cannonical_for_human.ttl → ...nd_mark_which_is_cannonical_for_human.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:uniprot_sequences_and_mark_which_is_cannonical_for_human a sh:SPARQLExecutable,
ex:107_uniprot_sequences_and_mark_which_is_cannonical_for_human a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "List all human UniProtKB entries and their sequences, marking if the sequence listed is the cannonical sequence of the matching entry."^^rdf:HTML ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...rot/uniprot_signature_match_start_end.ttl → ...108_uniprot_signature_match_start_end.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:uniprot_signature_match_start_end a sh:SPARQLExecutable,
ex:108_uniprot_signature_match_start_end a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "List all InterPro member database signature match start and end for a specific UniProtKB protein."@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion .../UniProt/uniprot_transporter_in_liver.ttl → ...Prot/109_uniprot_transporter_in_liver.ttl
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@prefix sh: <http://www.w3.org/ns/shacl#> .
@prefix spex:<https://purl.expasy.org/sparql-examples/ontology#> .

ex:uniprot_transporter_in_liver a sh:SPARQLExecutable,
ex:109_uniprot_transporter_in_liver a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Find human transporter proteins in reviewed UniProtKB/Swiss-Prot, that are expressed in the liver (Uses Bgee and UBERON)."^^rdf:HTML ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion examples/UniProt/uniprot_unamed_plasmids.ttl → ...s/UniProt/110_uniprot_unamed_plasmids.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:uniprot_unamed_plasmids a sh:SPARQLExecutable,
ex:110_uniprot_unamed_plasmids a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Sometimes it is known that a gene encoding a protein UniProtKB is located on a plasmid or an organelle, but the name of the plasmid is unknown."@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...es/UniProt/diseases_involving_enzymes.ttl → ...UniProt/62_diseases_involving_enzymes.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:diseases_involving_enzymes a sh:SPARQLExecutable,
ex:62_diseases_involving_enzymes a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Find diseases that are thought to be related to enzymes"@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...ving_enzymes_located_in_mitochondrion.ttl → ...ving_enzymes_located_in_mitochondrion.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:diseases_involving_enzymes_located_in_mitochondrion a sh:SPARQLExecutable,
ex:63_diseases_involving_enzymes_located_in_mitochondrion a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Find (Human genetic) diseases that are thought to be related to Enzymes, known to be located in the Mitochondrion"@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...es_related_to_mutation_in_active_site.ttl → ...es_related_to_mutation_in_active_site.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:diseases_related_to_mutation_in_active_site a sh:SPARQLExecutable,
ex:64_diseases_related_to_mutation_in_active_site a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Find (Human Genetic) diseases, that are related to a natural variant on the active site of an enzyme."@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...stinct_extinct_organisms_in_uniprotkb.ttl → ...stinct_extinct_organisms_in_uniprotkb.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:distinct_extinct_organisms_in_uniprotkb a sh:SPARQLExecutable,
ex:65_distinct_extinct_organisms_in_uniprotkb a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "How many distinct extinct organisms are represented in UniProtKB"@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...ct_rhea_transport_in_reviewed_uniprot.ttl → ...ct_rhea_transport_in_reviewed_uniprot.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:distinct_rhea_transport_in_reviewed_uniprot a sh:SPARQLExecutable,
ex:66_distinct_rhea_transport_in_reviewed_uniprot a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Count number of unique Rhea transport reactions annotated in reviewed UniProtKB entries."^^rdf:HTML ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion examples/UniProt/draft_human_metabolome.ttl → ...les/UniProt/67_draft_human_metabolome.ttl
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@prefix sh: <http://www.w3.org/ns/shacl#> .
@prefix spex:<https://purl.expasy.org/sparql-examples/ontology#> .

ex:draft_human_metabolome a sh:SPARQLExecutable,
ex:67_draft_human_metabolome a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Generate a draft human metabolome"@en ;
sh:prefixes _:sparql_examples_prefixes ;
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0 ...zymes_derived_from_at_least_two_mRNAs.ttl → ...zymes_derived_from_at_least_two_mRNAs.ttl
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0 ...teins_derived_from_at_least_two_mRNAs.ttl → ...teins_derived_from_at_least_two_mRNAs.ttl
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2 changes: 1 addition & 1 deletion ...ng_with_molecules_similar_to_dopamine.ttl → ...ng_with_molecules_similar_to_dopamine.ttl
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@prefix sh: <http://www.w3.org/ns/shacl#> .
@prefix spex:<https://purl.expasy.org/sparql-examples/ontology#> .

ex:enzymes_interacting_with_molecules_similar_to_dopamine a sh:SPARQLExecutable,
ex:70_enzymes_interacting_with_molecules_similar_to_dopamine a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Look for enzymes catalyzing reactions with molecules similar to dopamine."@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...mine_with_variants_related_to_disease.ttl → ...mine_with_variants_related_to_disease.ttl
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@prefix sh: <http://www.w3.org/ns/shacl#> .
@prefix spex:<https://purl.expasy.org/sparql-examples/ontology#> .

ex:enzymes_interacting_with_molecules_similar_to_dopamine_with_variants_related_to_disease a sh:SPARQLExecutable,
ex:71_enzymes_interacting_with_molecules_similar_to_dopamine_with_variants_related_to_disease a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Look for enzymes catalyzing reactions with molecules similar to dopamine, with natural variants related to a disease."@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion examples/UniProt/enzymes_mapping_to_PDB.ttl → ...les/UniProt/72_enzymes_mapping_to_PDB.ttl
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@prefix sh: <http://www.w3.org/ns/shacl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .

ex:enzymes_mapping_to_PDB a sh:SPARQLExecutable,
ex:72_enzymes_mapping_to_PDB a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment '''Select a mapping of UniProtKB enzymes to PDB entries using the UniProtKB cross-references to the <a href="https://www.uniprot.org/database/DB-0070">PDB</a> database.'''^^rdf:HTML ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...es/UniProt/enzymes_related_to_protein.ttl → ...UniProt/73_enzymes_related_to_protein.ttl
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@prefix sh: <http://www.w3.org/ns/shacl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .

ex:enzymes_related_to_protein a sh:SPARQLExecutable,
ex:73_enzymes_related_to_protein a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment '''Select Enzyme Classification (EC) classes that have a protein associated to them'''@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...th_at_least_two_transmembrane_domains.ttl → ...th_at_least_two_transmembrane_domains.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:enzymes_with_at_least_two_transmembrane_domains a sh:SPARQLExecutable,
ex:74_enzymes_with_at_least_two_transmembrane_domains a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Find Hydrolases (enzymes that catalyse the hydrolysis of various bonds) that have at least two transmembrane domains"@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...st_two_transmembrane_domains_PDB_xray.ttl → ...st_two_transmembrane_domains_PDB_xray.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:enzymes_with_at_least_two_transmembrane_domains_PDB_xray a sh:SPARQLExecutable,
ex:75_enzymes_with_at_least_two_transmembrane_domains_PDB_xray a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Find enzymes that have at least two transmembrane domains, whose 3D structure is elucidated through X-Ray analysis"@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...ith_mutagenesis_affecting_active_site.ttl → ...ith_mutagenesis_affecting_active_site.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:enzymes_with_mutagenesis_affecting_active_site a sh:SPARQLExecutable,
ex:76_enzymes_with_mutagenesis_affecting_active_site a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Find enzymes, where the active site is a region affected by mutagenesis and show the comment regarding mutagenesis effect."@en ;
sh:prefixes _:sparql_examples_prefixes ;
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0 .../enzymes_with_tyrosine_as_active_site.ttl → ..._enzymes_with_tyrosine_as_active_site.ttl
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2 changes: 1 addition & 1 deletion ...Prot/genetic_disease_related_proteins.ttl → ...t/78_genetic_disease_related_proteins.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:genetic_disease_related_proteins a sh:SPARQLExecutable,
ex:78_genetic_disease_related_proteins a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "List all UniProtKB proteins annotated to be related to a genetic disease."@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...les/UniProt/mnemonic_also_known_as_id.ttl → .../UniProt/79_mnemonic_also_known_as_id.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:mnemonic_also_known_as_id a sh:SPARQLExecutable,
ex:79_mnemonic_also_known_as_id a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "List all UniProtKB protein ID (mnemonic) for current UniProtKB entries."@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...ot/obsolete_mnemonic_also_known_as_id.ttl → ...80_obsolete_mnemonic_also_known_as_id.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:obsolete_mnemonic_also_known_as_id a sh:SPARQLExecutable,
ex:80_obsolete_mnemonic_also_known_as_id a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "List all UniProtKB protein ID (mnemonic) that where used in the past for current UniProtKB entries."@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...experimental_and_only_small_molecules.ttl → ...experimental_and_only_small_molecules.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:rhea_reactions_annotated_as_experimental_and_only_small_molecules a sh:SPARQLExecutable,
ex:81_rhea_reactions_annotated_as_experimental_and_only_small_molecules a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Find all Rhea (only small molecule) that are used in UniProtKB where the annotation has a paper and is tagged having experimental evidence."^^rdf:HTML ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...tions_associated_with_ec_in_uniprotkb.ttl → ...tions_associated_with_ec_in_uniprotkb.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:rhea_reactions_associated_with_ec_in_uniprotkb a sh:SPARQLExecutable,
ex:82_rhea_reactions_associated_with_ec_in_uniprotkb a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "List <a href=\"https://www.rhea-db.org/\">Rhea</a> reactions associated with an <a href=\"https://iubmb.qmul.ac.uk/enzyme/index.html\">EC (enzyme classification)</a>."^^rdf:HTML ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...s_not_associated_with_ec_in_uniprotkb.ttl → ...s_not_associated_with_ec_in_uniprotkb.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:rhea_reactions_not_associated_with_ec_in_uniprotkb a sh:SPARQLExecutable,
ex:83_rhea_reactions_not_associated_with_ec_in_uniprotkb a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "List <a href=\"https://www.rhea-db.org/\">Rhea</a> reactions that are <em>not</em> associated with an <a href=\"https://iubmb.qmul.ac.uk/enzyme/index.html\">EC (enzyme classification)</a>."^^rdf:HTML ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion examples/UniProt/taxonomy_hierarchy.ttl → examples/UniProt/84_taxonomy_hierarchy.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:taxonomy_hierarchy a sh:SPARQLExecutable,
ex:84_taxonomy_hierarchy a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Find all taxonomic records that describe species of the genus <a href=\"http://purl.uniprot.org/taxonomy/9605\">Homo<a>."^^rdf:HTML ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion examples/UniProt/taxonomy_host.ttl → examples/UniProt/85_taxonomy_host.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:taxonomy_host a sh:SPARQLExecutable,
ex:85_taxonomy_host a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Find taxon records that are known to have part of their life cycle in other organisms (e.g. parasite, symbiont, infection)"^^rdf:HTML ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...rot/taxonomy_rank_and_scientific_name.ttl → .../86_taxonomy_rank_and_scientific_name.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:taxonomy_rank_and_scientific_name a sh:SPARQLExecutable,
ex:86_taxonomy_rank_and_scientific_name a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Retrieve the rank and the scientific name of an taxonomic record. Not all taxonomic records have a <a href=\"http://purl.uniprot.org/core/rank\">rank</a> associated with them."^^rdf:HTML ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion .../taxonomy_with_at_least_one_swissprot.ttl → ..._taxonomy_with_at_least_one_swissprot.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:taxonomy_with_at_least_one_swissprot a sh:SPARQLExecutable,
ex:87_taxonomy_with_at_least_one_swissprot a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Find taxon records for which one reviewed UniProtKB/Swiss-Prot entry exists. We might expect species, strains, subspecies and isolates in the taxon list."^^rdf:HTML ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...Prot/uniparc_linked_to_active_uniprot.ttl → ...t/88_uniparc_linked_to_active_uniprot.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:uniparc_linked_to_active_uniprot a sh:SPARQLExecutable,
ex:88_uniparc_linked_to_active_uniprot a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Show for a given UniParc accessions which active UniProtKB entries have the same amino acid sequence"@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...t/uniparc_triples_directly_associated.ttl → ...9_uniparc_triples_directly_associated.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:uniparc_triples_directly_associated a sh:SPARQLExecutable,
ex:89_uniparc_triples_directly_associated a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Predicates and objects, for a given UniParc accession as a subject"@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...cted_by_metabolic_diseases_using_MeSH.ttl → ...cted_by_metabolic_diseases_using_MeSH.ttl
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@prefix sh: <http://www.w3.org/ns/shacl#> .
@prefix spex:<https://purl.expasy.org/sparql-examples/ontology#> .

ex:uniprot_affected_by_metabolic_diseases_using_MeSH a sh:SPARQLExecutable,
ex:90_uniprot_affected_by_metabolic_diseases_using_MeSH a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Proteins involved in metabolic diseases in UniProtKB. Using the MeSH concept as a root to find metabolic diseases in UniProt."@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...uniprot_alternative_protein_full_name.ttl → ...uniprot_alternative_protein_full_name.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:uniprot_alternative_protein_full_name a sh:SPARQLExecutable,
ex:91_uniprot_alternative_protein_full_name a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Alternative protein full names for UniProtKB entries"@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...t/uniprot_bioregistry_iri_translation.ttl → ...2_uniprot_bioregistry_iri_translation.ttl
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@prefix sh: <http://www.w3.org/ns/shacl#> .
@prefix spex:<https://purl.expasy.org/sparql-examples/ontology#> .

ex:uniprot_bioregistry_iri_translation a sh:SPARQLExecutable,
ex:92_uniprot_bioregistry_iri_translation a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "Translate the global unique identifier for a UniProtKB record into other options using the bioregistry translating endpoint."@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion ...Prot/uniprot_created_modified_updated.ttl → ...t/93_uniprot_created_modified_updated.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:uniprot_created_modified_updated a sh:SPARQLExecutable,
ex:93_uniprot_created_modified_updated a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "List the created, last modified, and last sequence update dates for UniProtKB proteins."@en ;
sh:prefixes _:sparql_examples_prefixes ;
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2 changes: 1 addition & 1 deletion examples/UniProt/uniprot_encoding_gene.ttl → ...ples/UniProt/94_uniprot_encoding_gene.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:uniprot_encoding_gene a sh:SPARQLExecutable,
ex:94_uniprot_encoding_gene a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "List UniProtKB proteins with their associated named gene"@en ;
sh:prefixes _:sparql_examples_prefixes ;
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0 ...iprot_encoding_gene_alternative_names.ttl → ...iprot_encoding_gene_alternative_names.ttl
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2 changes: 1 addition & 1 deletion ...es/UniProt/uniprot_encoding_gene_name.ttl → ...UniProt/96_uniprot_encoding_gene_name.ttl
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@prefix schema: <https://schema.org/> .
@prefix sh: <http://www.w3.org/ns/shacl#> .

ex:uniprot_encoding_gene_name a sh:SPARQLExecutable,
ex:96_uniprot_encoding_gene_name a sh:SPARQLExecutable,
sh:SPARQLSelectExecutable ;
rdfs:comment "List UniProtKB proteins with their associated gene and the gene's preffered name"@en ;
sh:prefixes _:sparql_examples_prefixes ;
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