We've stopped development on this project, Please checkout mondrian for the latest DLP+ workflows: https://github.com/mondrian-scwgs/mondrian
For a detailed guide see INSTALL
single cell pipeline is suite of workflows for analysing the single cell data generated by DLP+.
The source code is currently hosted on GitHub at: https://github.com/shahcompbio/single_cell_pipeline
docker containers are available at https://quay.io/organization/singlecellpipeline
conda packages are available at https://anaconda.org/shahcompbio
The official documentation is hosted on http://single_cell_pipeline.readthedocs.io/
Please contact the developers at
- Diljot Grewal [email protected]
- Andrew Mcpherson [email protected]