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Cramv4 #502
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Cramv4 #502
Commits on May 28, 2020
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First draft of CRAM v4.0 specification
This has been forked from CRAMv3.tex c831aba as given this is a major release we don't wish to keep markup for both versions in the same document.
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This includes a massive reorganisation of the document, which is long overdue. It also now replaces EXTERNAL with a variety of type specific codecs for signed, unsigned and bytes; ditches HUFFMAN (along with all other bit codecs) and adds CONST codecs instead; removes the CORE block; removes "external" for block descriptions, instead favouring data blocks as a way to distinguish from header / structure containing blocks. As yet, nothing implements this variant of V4.0! However it's far cleaner to describe and hopefully far simpler to implement due to the aggressive culling of largely unused features.
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- BYTE is now the same ID as the old EXTERNAL, given it's identical. But we refer to it as BYTE for clarity sake. - Removed sint vs uint in data series types as it's no longer necessary to bake this into the specification. - Moved the Data Series format text to later on and merged with the other tables, so the concepts and formats are introduced at the same point.
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Commits on Jun 22, 2020
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Commits on Jan 29, 2024
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Document FP is delta against the last FP or zero.
See samtools#747 for CRAM 3.x issue.
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