.gitignore

# History files
.Rhistory
.Rapp.history
.DS_Store

# Session Data files
.RData
.RDataTmp

# User-specific files
.Ruserdata

# Example code in package build process
*-Ex.R

# Output files from R CMD build
/*.tar.gz

# Output files from R CMD check
/*.Rcheck/

# RStudio files
.Rproj.user/

# produced vignettes
vignettes/*.html
vignettes/*.pdf

# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth

# knitr and R markdown default cache directories
*_cache/
/cache/

# Temporary files created by R markdown
*.utf8.md
*.knit.md

# R Environment Variables
.Renviron

# pkgdown site
docs/

# translation temp files
po/*~

# RStudio Connect folder
rsconnect/

# Data folders
data/*
!data/README.md
logs/
plots/
results/
resources/

# Snakemake stuff
.snakemake/

# R project
kinase_benchmark.Rproj

# R
.Rproj.user
.Rhistory
.RData
.Ruserdata
.Rapp.history
.DS_Store

# Python
.ipynb_checkpoints

# Omnipath
omnipathr-log/

# manuscript
manuscript/
manuscript_revisions/