You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I've been bench marking the time it takes for me to run a genome scan (scan1) by increase the
number of cores that I want to use. I was quite surprised to find that the quickest was running on 1
core. In short, I ran scan1 with one phenotype and then increasing the number of cores. I got the
following times:
1 core 1 phenotype: 29 sec
2 cores 1 phenotype: 46 sec
10 cores 1 phenotype: 2 min 51 sec.
Is this something you have seen before and are aware of?
I'm doing the analysis on a 32-core processor with 128 GB RAM.
The text was updated successfully, but these errors were encountered:
A user on the rqtl2-disc list mentioned a problem with multi-core calculations in
scan1()
:The text was updated successfully, but these errors were encountered: