home_syllabus.qmd

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title: "Syllabus"
subtitle: "Syllabus, learning outcomes and entry requirements"
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## Syllabus

The syllabus for this workshop are as follows.

- Working on the unix/linux command line
  - Command line navigation and related commands: cd, mkdir, rm, rmdir
  - Commonly used linux tools: cp, mv, tar, less, more, head, tail, nano, grep, top, man
  - Wildcards
  - Ownership and permissions
  - Symbolic links
  - Piping commands
- Working on remote computing cluster
  - Logging on to UPPMAX
  - Booking resources
  - Job templates, submission and queues
  - Modules

## Learning outcomes

After this workshop you should be able to:

- Describe the basic principles of next generation sequencing.
- Use the Linux command line interface to manage simple file processing operations, and organise directory structures.
- Connect to and work on a remote compute cluster.
- Apply programs in Linux for analysis of NGS data.

## Entry requirements

- This is a national course open to PhD students, postdocs, group leaders and core facility staff.
- A background in genetics, cell biology, biomedicine, biochemistry, bioinformatics or comparable is desirable.

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