diff --git a/poetry.lock b/poetry.lock index 59535a35e..9b66ce5c6 100644 --- a/poetry.lock +++ b/poetry.lock @@ -260,29 +260,31 @@ dev = ["black", "coverage", "isort", "pre-commit", "pyenchant", "pylint"] [[package]] name = "anndata" -version = "0.10.5" +version = "0.10.9" description = "Annotated data." optional = false python-versions = ">=3.9" files = [ - {file = "anndata-0.10.5-py3-none-any.whl", hash = "sha256:fbcf934a3e99e7dda89b1d48f36f675504ea2e65ab4408daa9526bc305c14ebd"}, - {file = "anndata-0.10.5.tar.gz", hash = "sha256:a55fcd75c2b445ad82938ecd41de1dd4caf66547290d2423327e0e89f71bf590"}, + {file = "anndata-0.10.9-py3-none-any.whl", hash = "sha256:e16c259bfd06c0f9ba7fdc9c2208828f5ef5f174356596c33206bb3f015b053a"}, + {file = "anndata-0.10.9.tar.gz", hash = "sha256:fe36f2f3f8040ffed866c4932253407f594cfe34d420fe5b7854986cb6bb7178"}, ] [package.dependencies] -array-api-compat = "*" -h5py = ">=3" +array-api-compat = ">1.4,<1.5 || >1.5" +h5py = ">=3.1" natsort = "*" -numpy = ">=1.16.5" -packaging = ">=20" -pandas = ">=1.1.1,<2.1.0rc0 || >2.1.0rc0,<2.1.2 || >2.1.2" -scipy = ">1.4" +numpy = ">=1.23" +packaging = ">=20.0" +pandas = ">=1.4,<2.1.0rc0 || >2.1.0rc0,<2.1.2 || >2.1.2" +scipy = ">1.8" [package.extras] -dev = ["pytest-xdist", "setuptools-scm"] -doc = ["awkward (>=2.0.7)", "ipython", "myst-parser", "nbsphinx", "readthedocs-sphinx-search", "scanpydoc[theme,typehints] (>=0.13.4)", "sphinx (>=4.4)", "sphinx-autodoc-typehints (>=1.11.0)", "sphinx-book-theme (>=1.1.0)", "sphinx-copybutton", "sphinx-design (>=0.5.0)", "sphinx-issues", "sphinxext-opengraph", "zarr"] +cu11 = ["cupy-cuda11x"] +cu12 = ["cupy-cuda12x"] +dev = ["pytest-xdist", "setuptools-scm", "towncrier (>=24.8.0)"] +doc = ["awkward (>=2.0.7)", "ipython", "myst-parser", "nbsphinx", "readthedocs-sphinx-search", "scanpydoc[theme,typehints] (>=0.13.6)", "sphinx (>=4.4)", "sphinx-autodoc-typehints (>=2.2.0)", "sphinx-book-theme (>=1.1.0)", "sphinx-copybutton", "sphinx-design (>=0.5.0)", "sphinx-issues", "sphinx-toolbox", "sphinxext-opengraph", "zarr"] gpu = ["cupy"] -test = ["awkward (>=2.3)", "boltons", "dask[array,distributed]", "httpx", "joblib", "loompy (>=3.0.5)", "matplotlib", "openpyxl", "pyarrow", "pytest (>=6.0)", "pytest-cov (>=2.10)", "pytest-memray", "scanpy", "scikit-learn", "zarr"] +test = ["awkward (>=2.3)", "boltons", "dask[array,distributed] (>=2022.09.2,<2024.8.0)", "httpx", "joblib", "loompy (>=3.0.5)", "matplotlib", "openpyxl", "pyarrow", "pytest (>=8.2)", "pytest-cov (>=2.10)", "pytest-memray", "pytest-mock", "scanpy", "scikit-learn", "zarr (<3.0.0a0)"] [[package]] name = "annotated-types"