pyproject.toml

[tool.poetry]
name = "rxiv-rest-api"
version = "0.1.0"  # semantic-release
description = "A service for rXiv REST API, such as biorxiv and medrxiv"
authors = ["Ivan Ogasawara <ivan.ogasawara@gmail.com>"]
packages = [
  {include = "rxiv_rest_api", from="src"},
]
license = "BSD 3 Clause"
exclude = [
  ".git/*",
  ".env*",
]
include = ["src/rxiv_rest_api/py.typed"]

[tool.poetry.dependencies]
python = ">=3.8.1,<4"
flask = ">=3"
elasticsearch = ">=8"


[tool.poetry.group.dev.dependencies]
pytest = ">=7.3.2"
pytest-cov = ">=4.1.0"
coverage = ">=7.2.7"
black = ">=23.3.0"
pre-commit = ">=3.3.2"
ruff = ">=0.0.278"
mypy = ">=1.3.0"
bandit = ">=1.7.5"
vulture = ">=2.7"
mccabe = ">=0.6.1"
# if you want to use docker-compose from your system, remove compose-go here
compose-go = ">=2.18.1"
ipython = "<8"
ipykernel = ">=6.0.0"
Jinja2 = ">=3.1.2"
mkdocs = ">=1.4.3"
mkdocs-exclude = ">=1.0.2"
mkdocs-jupyter = ">=0.24.1"
mkdocs-literate-nav = ">=0.6.0"
mkdocs-macros-plugin = ">=0.7.0,<1"
mkdocs-material = ">=9.1.15"
mkdocstrings = ">=0.21.2"
mkdocstrings-python = ">=1.1.2"
makim =">=1.12.0"
containers-sugar = "1.10.0"
jupyterlab = "^4.0.12"

[tool.pytest.ini_options]
testpaths = [
    "tests",
]

[tool.black]
line-length = 79
target-version = ["py38"]
force-exclude = '''(?x)(
    docs/*
  | .*\\.egg-info
)'''  # TOML's single-quoted strings do not require escaping backslashes

[tool.bandit]
exclude_dirs = ["tests"]
targets = "./"

[tool.vulture]
exclude = ["tests"]
ignore_decorators = []
ignore_names = []
make_whitelist = true
min_confidence = 80
paths = ["./"]
sort_by_size = true
verbose = false

[tool.ruff]
line-length = 79
force-exclude = true
src = ["./"]
exclude = [
  'docs',
]
select = [
  "E",   # pycodestyle
  "F",   # pyflakes
  "D",   # pydocstyle
  "YTT", # flake8-2020
  "RUF", # Ruff-specific rules
  "I001",  # isort
]
fixable = ["I001"]

[tool.ruff.pydocstyle]
convention = "numpy"

[tool.ruff.isort]
# Use a single line between direct and from import
lines-between-types = 1

[tool.mypy]
python_version = "3.8"
check_untyped_defs = true
strict = true
ignore_missing_imports = true
warn_unused_ignores = true
warn_redundant_casts = true
warn_unused_configs = true