Open Problems in Single-Cell Analysis

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30 packages

metrics/regression_1
Published Jul 19, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/metrics/regression_1

934
metrics/regression_2
Published Aug 1, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/metrics/regression_2

836
robustness_analysis/noise_grn
Published Aug 24, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/robustness_analysis/noise_grn

400
control_methods/positive_control
Published Jul 19, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/control_methods/positive_control

98
robustness_analysis/causal_grn
Published Sep 5, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/robustness_analysis/causal_grn

77
control_methods/negative_control
Published Jul 19, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/control_methods/negative_control

33
grn_methods/scglue
Published Aug 3, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/grn_methods/scglue

26
control_methods/pearson_corr
Published Sep 18, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/control_methods/pearson_corr

22
grn_methods/tigress
Published Aug 29, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/grn_methods/tigress

21
grn_methods/scsgl
Published Aug 29, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/grn_methods/scsgl

21
grn_methods/portia
Published Aug 28, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/grn_methods/portia

19
control_methods/pearson_causal
Published Sep 18, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/control_methods/pearson_causal

18
grn_methods/scenicplus
Published Aug 24, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/grn_methods/scenicplus

18
grn_methods/pidc
Published Aug 29, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/grn_methods/pidc

15
grn_methods/grnboost2
Published Aug 29, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/grn_methods/grnboost2

15
grn_methods/celloracle
Published Aug 3, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/grn_methods/celloracle

14
grn_methods/ppcor
Published Aug 29, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/grn_methods/ppcor

11
grn_methods/scgpt
Published Sep 9, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/grn_methods/scgpt

11
perturbation/sc_counts
Published Aug 3, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/perturbation/sc_counts

7
grn_methods/granie
Published Aug 16, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/grn_methods/granie

7
grn_methods/scenic
Published Sep 14, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/grn_methods/scenic

6
grn_methods/genie3
Published Aug 29, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/grn_methods/genie3

5
perturbation/normalization
Published Aug 3, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/perturbation/normalization

4
perturbation/batch_correction_scgen
Published Aug 3, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/perturbation/batch_correction_scgen

2
perturbation/batch_correction_seurat
Published Aug 3, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/perturbation/batch_correction_seurat

2
methods/pycistopic
Published Aug 9, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/methods/pycistopic

1
create_test_data
Published Aug 1, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/create_test_data

1
methods/multiome
Published Aug 1, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/methods/multiome

1
pycistopic
Published Aug 7, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/pycistopic

1
methods/dummy
Published Jul 19, 2024 by Open Problems in Single-Cell Analysis in task_grn_inference/methods/dummy

1