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    38 repositories

    • galop

      Public
      GALOP - Genome Assembly using Long reads Pipeline
      Python
      •
      Other
      •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

    • Corals-associated-data

      Public
      R
      •
      Other
      •1•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • Gmove

      Public
      Gmove is a gene prediction tool
      C++
      •1•21•3•0•Updated Oct 9, 2024Oct 9, 2024

    • PelagomonasNitrogenMetabolism

      Public
      Pipeline and scripts to generate results of the manuscript "Nitrogen metabolism in the picoalgae Pelagomonas calceolata: disentangling cyanate lyase function under different nutrient conditions"
      Perl
      •0•0•0•0•Updated Sep 26, 2024Sep 26, 2024

    • fastoche

      Public
      Easily get metrics from Fasta and Fastq files, compressed or not
      Rust
      •0•0•0•0•Updated May 30, 2024May 30, 2024

    • HAPO-G

      Public
      Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.
      bioinformaticsgenomicsgenomepolishing
      C
      •
      Other
      •2•24•0•0•Updated Mar 22, 2024Mar 22, 2024

    • LocoGSE

      Public
      A tool to estimate the genome size
      Python
      •
      Other
      •0•2•1•0•Updated Mar 15, 2024Mar 15, 2024

    • bamFilters

      Public
      A tool to filter BAM files
      C
      •1•1•1•0•Updated Mar 1, 2024Mar 1, 2024

    • NGL

      Public
      JavaScript
      •
      Other
      •0•0•0•0•Updated Oct 16, 2023Oct 16, 2023

    • NGL-Dependencies

      Public
      0•0•0•0•Updated Oct 11, 2023Oct 11, 2023

    • NCLIM-20102618B

      Public
      R
      •
      MIT License
      •2•0•0•0•Updated Jun 23, 2023Jun 23, 2023

    • TaraPacific_Pocillopora-transcriptomic

      Public
      Transcriptomic plasticity and symbiont shift underpin Pocillopora acclimatization across heat-stress regimes in the Pacific Ocean
      R
      •0•1•0•0•Updated May 8, 2023May 8, 2023

    • Renan-associated-data

      Public
      Roff
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 5, 2023Jan 5, 2023

    • Pahang-associated-data

      Public
      This repository contains all the scripts used to produce the paper's figures
      Python
      •
      GNU General Public License v3.0
      •2•9•0•0•Updated Jul 21, 2021Jul 21, 2021

    • BoardION

      Public
      C++
      •
      Other
      •1•11•5•0•Updated May 6, 2021May 6, 2021

    • biscot

      Public
      Bionano SCaffolding Correction Tool
      bioinformaticsgenomicsmapsscaffoldingopticalbionano
      Python
      •
      Other
      •2•9•1•0•Updated Nov 9, 2020Nov 9, 2020

    • NGL-documentation

      Public
      0•0•0•0•Updated Nov 6, 2020Nov 6, 2020

    • fastxtend

      Public
      A package to perform NGS quality control
      C++
      •2•4•0•0•Updated Aug 22, 2019Aug 22, 2019

    • Ultimate-DataTable

      Public
      This AngularJS directive generate a HTML table with build-in fonctionnality like save, edit, remove, pagination etc...
      JavaScript
      •26•45•13•1•Updated Sep 19, 2018Sep 19, 2018

    • hibernatetools-gradle-plugin

      Public
      Hibernate tools plugin to reverse engineering database from gradle
      Groovy
      •
      Other
      •12•14•4•0•Updated Sep 7, 2018Sep 7, 2018

    • ReadUntil

      Public
      0•0•0•0•Updated Sep 8, 2017Sep 8, 2017

    • tetracker

      Public
      TE-Tracker, a program dedicated to the de-novo discovery of transposition events.
      Perl
      •2•0•4•1•Updated Aug 14, 2017Aug 14, 2017

    • orthodotter

      Public
      Synteny plots (oxford grid)
      Perl
      •1•3•0•0•Updated Jun 14, 2017Jun 14, 2017

    • NaS

      Public
      NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore technologies to produce NaS (Nanopore Synthetic-long) reads of up to 60 kb that aligned with no error to the reference genome and spanned repetitive regions.
      Perl
      •2•15•1•0•Updated Mar 28, 2017Mar 28, 2017

    • Microcyc-model

      Public
      Other
      •0•0•0•0•Updated Mar 24, 2017Mar 24, 2017

    • bio-scribe

      Public
      Performs basics operation from various file format
      Java
      •
      Other
      •0•0•0•0•Updated Dec 7, 2016Dec 7, 2016

    • taskmanager

      Public
      TaskManager allows to develop generic workflows in Perl, potentially executable in various environments and with different degrees of parallelization. TaskManager can ex-ecute from two to thousands tasks in parallel, depending on the available resources, using "batch manager" as Slurm or Lsf
      Perl
      •0•0•0•0•Updated Aug 25, 2016Aug 25, 2016

    • saturn

      Public
      A tool for assessing the library saturation without alignment
      C++
      •2•2•0•0•Updated Jul 12, 2016Jul 12, 2016

    • obo-parser

      Public
      A java parser for obo file format as provided by unipathway
      Java
      •
      Other
      •0•3•0•0•Updated Jun 30, 2016Jun 30, 2016

    • fuzzy-lca-module

      Public
      Module dedicated to LCA algorithms and taxonomy management
      Java
      •
      Other
      •0•0•0•0•Updated Jun 20, 2016Jun 20, 2016