Repositories list

• dance

  Public
  DANCE: a deep learning library and benchmark platform for single-cell analysis

  pythondata-sciencebenchmark+ 11machine-learningbioinformaticsdeep-learningcomputational-biologydancesingle-cellmultimodality+ 4

  Python

  •

  BSD 2-Clause "Simplified" License

  •36•351•26•8•Updated Nov 26, 2024Nov 26, 2024

• awesome-foundation-model-single-cell-papers

  Public
  MIT License

  •23•169•0•0•Updated Nov 18, 2024Nov 18, 2024

• awesome-deep-learning-single-cell-papers

  Public
  Apache License 2.0

  •92•700•5•0•Updated Sep 30, 2024Sep 30, 2024

• test.io

  Public
  test

  0•0•0•0•Updated Sep 22, 2024Sep 22, 2024

• awesome-agents-biology-papers

  Public
  2•6•0•0•Updated Sep 19, 2024Sep 19, 2024

• SpatialCTD

  Public
  A large scale atlas coming with Graph Neural Network solution for spatial cell type deconvolution

  Jupyter Notebook

  •

  MIT License

  •1•38•2•0•Updated Sep 15, 2024Sep 15, 2024

• scDiff

  Public
  scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models

  Python

  •

  MIT License

  •4•22•2•0•Updated Aug 13, 2024Aug 13, 2024

• focus

  Public
  Python

  •0•3•1•0•Updated Aug 3, 2024Aug 3, 2024

• dance_auto_preprocess

  Public
  MIT License

  •0•0•0•0•Updated Apr 11, 2024Apr 11, 2024

• scLLMBench

  Public
  scLLMBench: A fexible framework for accelerating single-cell foundation model benchmarking

  MIT License

  •1•0•0•0•Updated Apr 8, 2024Apr 8, 2024

• CellPLM

  Public
  Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.

  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •6•69•15•0•Updated Mar 28, 2024Mar 28, 2024

• awesome-molecule-protein-pretrain-papers

  Public
  3•32•0•0•Updated Mar 11, 2024Mar 11, 2024

• scMoMem

  Public
  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Feb 9, 2024Feb 9, 2024

• scMoFormer

  Public
  Single-Cell Multimodal Prediction via Transformer

  Python

  •

  MIT License

  •3•22•1•0•Updated Feb 7, 2024Feb 7, 2024

• dance-tutorials

  Public
  Jupyter Notebook

  •

  MIT License

  •0•4•1•0•Updated Nov 13, 2023Nov 13, 2023

• Mem-GAN

  Public
  A generative model for pseudo membrane generation of single-cell imaging in fluorescent microscopy

  Python

  •

  MIT License

  •0•8•0•0•Updated Jul 22, 2023Jul 22, 2023

• awesome-bio-chatgpt

  Public
  MIT License

  •0•21•0•0•Updated Apr 27, 2023Apr 27, 2023