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    14 repositories

    • BGIvsIllumina_scRNASeq

      Public
      Code repository for the publication "Comparative performance of the BGI and Illumina sequencingtechnology for single-cell RNA-sequencing" by Senabouth et al.
      Python
      •
      GNU General Public License v3.0
      •3•4•0•0•Updated Oct 12, 2021Oct 12, 2021

    • scGPS

      Public
      A framework for clustering (CORE) and estimation of relationship between pairs of clusters (scGPS) from single cell data
      R
      •4•4•2•0•Updated Dec 16, 2020Dec 16, 2020

    • hiPSC_paper_2018

      Public
      R
      •3•7•2•0•Updated Apr 25, 2020Apr 25, 2020

    • RetinalCellAtlas_EMBOJ_2019

      Public
      Additional files to accompany adult human retina cell atlas - Lukowski & Lo et al 2019 EMBO J
      MIT License
      •1•0•0•0•Updated Oct 3, 2019Oct 3, 2019

    • ascend

      Public
      R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)
      rscrnaseqsinglecellscrna-seq-analysisrpackages
      R
      •7•22•7•0•Updated Aug 28, 2019Aug 28, 2019

    • ChromiumSingleCellPipeline

      Public
      Scripts to generate custom references and PBS scripts for the 10x Genomics Chromium pipeline.
      Python
      •0•1•0•0•Updated Jan 17, 2019Jan 17, 2019

    • scIVA

      Public
      R package and web-tool for interactive visualisation and analysis of single cell RNA-Seq data
      R
      •6•9•0•0•Updated Nov 13, 2018Nov 13, 2018

    • SingleCells2018Workshop

      Public
      Materials for the Single Cells 2018 informatics workshop
      HTML
      •6•8•0•0•Updated Aug 10, 2018Aug 10, 2018

    • ascend-guide

      Public
      Resources for getting the most out of the ascend R package
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 2, 2018Mar 2, 2018

    • RetinaGanglionCells

      Public
      Public repository for code associated with the processing of single-cell retina ganglion cells
      HTML
      •0•2•0•0•Updated Feb 1, 2018Feb 1, 2018

    • TENxGenomics

      Public
      Interface to 10x Genomics' 1.3 m single cell data set
      R
      •7•1•0•0•Updated May 3, 2017May 3, 2017

    • scRNA-Seq-TCC-prep

      Public
      Preprocessing of single-cell RNA-Seq data for input to kallisto
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •26•0•0•0•Updated Dec 1, 2016Dec 1, 2016

    • eqtlOverlapper

      Public
      R
      •0•0•0•0•Updated Nov 11, 2016Nov 11, 2016

    • UMI-tools

      Public
      Tools for handling Unique Molecular Identifiers in NGS data sets
      Python
      •
      MIT License
      •190•0•0•0•Updated Oct 18, 2016Oct 18, 2016