Repositories list

• ShapeAXI

  Public
  Shape Analysis Explainability And Interpretability

  Python

  •

  Apache License 2.0

  •4•3•1•0•Updated Nov 21, 2024Nov 21, 2024

• SlicerAutomatedDentalTools

  Public
  A 3D Slicer extension to use AMASSS, ALI-CBCT and ALI-IOS

  machine-learningdeep-learningpytorch+ 7segmentationorthodontics3d-models3d-slicer-extension3d-imageslandmark-localizationmonai

  Python

  •

  Other

  •25•85•12•1•Updated Aug 28, 2024Aug 28, 2024

• VolumeAXI

  Public
  Interpretable Convolutional Neural Network with Grad-CAM.

  Python

  •0•0•0•0•Updated Aug 5, 2024Aug 5, 2024

• SlicerConda

  Public
  The "Conda Path Manager" for Slicer simplifies Miniconda integration by managing installation paths and providing tools for executing Conda commands.

  condawsl3d-slicer-extension+ 2miniconda-environmentsminiconda3

  Python

  •

  Apache License 2.0

  •2•0•3•1•Updated Jul 30, 2024Jul 30, 2024

• SlicerDentalModelSeg

  Public
  This extension aims to provide a GUI for a deep-learning automated teeth segmentation tool that we developed at the University of North Carolina in Chapel Hill in collaboration with the University of Michigan in Ann Arbor.

  3d-slicer-extension

  Python

  •

  Apache License 2.0

  •10•45•5•0•Updated May 3, 2024May 3, 2024

• ShapeVariationAnalyzer

  Public
  Shape modeling and classification, extract shape features

  shapemodelclassification+ 4principal-component-analysis3d-slicer-extensionslicercmfdeep-learning

  Python

  •

  Apache License 2.0

  •22•8•5•2•Updated Apr 23, 2024Apr 23, 2024

• Q3DCExtension

  Public
  3d-slicer-extensionslicercmf

  Python

  •

  Apache License 2.0

  •14•4•6•1•Updated Apr 23, 2024Apr 23, 2024

• PickAndPaintExtension

  Public
  3d-slicer-extensionslicercmf

  Python

  •

  Apache License 2.0

  •6•3•5•0•Updated Apr 23, 2024Apr 23, 2024

• MeshStatisticsExtension

  Public
  3d-slicer-extensionslicercmf

  Python

  •

  Apache License 2.0

  •6•2•0•0•Updated Apr 23, 2024Apr 23, 2024

• AnglePlanes-Extension

  Public
  3d-slicer-extensionslicercmf

  Python

  •

  Apache License 2.0

  •11•1•3•0•Updated Apr 23, 2024Apr 23, 2024

• EasyClip-Extension

  Public
  3d-slicer-extensionslicercmf

  Python

  •

  Apache License 2.0

  •7•4•2•0•Updated Apr 23, 2024Apr 23, 2024

• CMFreg

  Public
  Cranio-Maxillofacial registration

  3d-slicer-extensionslicercmf

  Python

  •11•10•1•1•Updated Apr 23, 2024Apr 23, 2024

• DatabaseInteractorExtension

  Public
  3d-slicer-extensionslicercmf

  Python

  •

  Apache License 2.0

  •5•0•0•0•Updated Apr 23, 2024Apr 23, 2024

• AMASSS_CBCT

  Public
  Automatic segmentation of CBCT scans with a 3D Unet

  Python

  •8•0•0•0•Updated Apr 5, 2024Apr 5, 2024

• Smart-DOC

  Public
  JavaScript

  •5•4•5•23•Updated Oct 3, 2023Oct 3, 2023

• Fly-by-CNN

  Public
  Acquire features from a 3D object using a ray-cast approach.

  Jupyter Notebook

  •15•16•0•0•Updated Jun 12, 2023Jun 12, 2023

• Cl3ft

  Public
  Cleft analysis tools

  Python

  •

  Apache License 2.0

  •0•0•1•0•Updated Mar 18, 2023Mar 18, 2023

• TMJSeg

  Public
  Temporomandibular joint segmentation algorithm for computed tomography images

  segmentationtemporomandibular-jointmatlab

  MATLAB

  •

  Apache License 2.0

  •0•1•0•0•Updated Feb 22, 2023Feb 22, 2023

• TMJ-OAI

  Public
  Scripts for OAI project

  R

  •4•0•0•0•Updated Feb 22, 2023Feb 22, 2023

• TMJOA_Longitudinal

  Public
  EHPN modeling for longitudinal prediction of temporomandibular joint osteoarthritis

  R

  •3•0•0•0•Updated Feb 10, 2023Feb 10, 2023

• SlicerBatchAnonymize

  Public
  Slicer extension to anonymize a batch of DICOM images.

  Python

  •

  Apache License 2.0

  •5•0•0•0•Updated Feb 3, 2023Feb 3, 2023

• ASO

  Public
  Automatic standardized orientation

  Python

  •

  Apache License 2.0

  •2•0•0•0•Updated Dec 1, 2022Dec 1, 2022

• 3DTeethSeg22_challenge

  Public
  Dental model seg challenge docker repository build

  Python

  •

  Apache License 2.0

  •0•14•1•0•Updated Sep 14, 2022Sep 14, 2022

• MFSDA_Python

  Public
  Multivariate Functional Shape Data Analysis in Python (MFSDA_Python) is a Python based package for statistical shape analysis. A multivariate varying coefficient model is introduced to build the association between the multivariate shape measurements and demographic information and other clinical, biological variables. Statistical inference, i.e…

  3d-slicer-extension

  Python

  •

  Apache License 2.0

  •13•3•7•0•Updated Aug 31, 2022Aug 31, 2022

• ALI_CBCT

  Public
  Automatic landmark identification in CBCT scans

  Python

  •3•2•0•0•Updated Jul 29, 2022Jul 29, 2022

• ALI_IOS

  Public
  Automatic Landmark Identification in Intra Oral scans

  segmentationlandmark-detectionmultiview+ 23dmodelshapeanalysis

  Python

  •3•1•1•0•Updated Jul 19, 2022Jul 19, 2022

• SlicerCMF

  Public
  SlicerCMF is the dissemination vehicle of powerful dental image analysis methodology based on 3D Slicer open-source software. SlicerCMF supports patient-specific decision making and assessment of the disease progression via registration of serial images. http://cmf.slicer.org/

  3d-slicer-extensionslicercmf

  HTML

  •

  Other

  •1•8•4•0•Updated May 16, 2022May 16, 2022

• TMJPI

  Public
  Dockerfile

  •2•0•0•0•Updated Apr 19, 2022Apr 19, 2022

• SlicerCMF-docker

  Public
  This repository will contain the docker files that containerize Slicer CLIs and will be accessible through dsci

  Shell

  •

  Apache License 2.0

  •0•0•1•0•Updated Nov 10, 2021Nov 10, 2021

• Utilities

  Public
  Utilities repository that will host general purpose applications that will be containerized in a docker image and deployed in DSCI

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 10, 2021Nov 10, 2021