The Blue Brain Project

All

331 repositories

appositionizer
Public
Detect physical locations for synapses
neuroscience connectome connectome-generation
C++
•
Apache License 2.0
•1•1•0•0•Updated Nov 28, 2024Nov 28, 2024
HighFive
Public
HighFive - Header-only C++ HDF5 interface
C++
•
Boost Software License 1.0
•162•696•47•4•Updated Nov 28, 2024Nov 28, 2024
MorphIO
Public
A python and C++ library for reading and writing neuronal morphologies
morphology neurons neuron python glia mitochondria reticulum
C++
•
Apache License 2.0
•24•27•30•11•Updated Nov 28, 2024Nov 28, 2024
Brayns
Public
Visualizer for large-scale and interactive ray-tracing of neurons
visualization python interactive websockets neuroscience json-rpc neurons raytracing volume-rendering pathtracing
C++
•
GNU Lesser General Public License v3.0
•47•291•0•0•Updated Nov 28, 2024Nov 28, 2024
molsys-metabolismndam
Public
Jupyter Notebook
•
GNU Affero General Public License v3.0
•0•0•0•0•Updated Nov 28, 2024Nov 28, 2024
blueetl
Public
Multiple simulations analysis tool
python simulation neuroscience pandas analyse simulation-campaign
Python
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Apache License 2.0
•1•6•0•3•Updated Nov 27, 2024Nov 27, 2024
spack
Public
A flexible package manager that supports multiple versions, configurations, platforms, and compilers.
Python
•
Other
•2.3k•9•2•41•Updated Nov 27, 2024Nov 27, 2024
core-web-app
Public
Open Brain Platform
neuroscience simulation-neuroscience
TypeScript
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Apache License 2.0
•0•4•0•0•Updated Nov 27, 2024Nov 27, 2024
bbp-atlas-pipeline
Public
Set of processing modules that generate annotation volumes, brain region hierarchies, direction vectors, orientations and placement hints, cell density volumes for several cell types, CellComposition of the brain regions.
database atlas
Jupyter Notebook
•
Apache License 2.0
•0•1•0•1•Updated Nov 27, 2024Nov 27, 2024
nexus
Public
Blue Brain Nexus - A knowledge graph for data-driven science
scala nexus provenance knowledge-graph shacl
Scala
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Apache License 2.0
•74•280•371•1•Updated Nov 27, 2024Nov 27, 2024
atlas-densities
Public
Tools to compute densities in the context of brain atlases.
build atlas
Python
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Apache License 2.0
•8•4•8•5•Updated Nov 27, 2024Nov 27, 2024
neurodamus
Public
A BBP Simulation Control application for NEURON
simulation cellular neuron-simulations brain
Python
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Apache License 2.0
•8•9•9•8•Updated Nov 26, 2024Nov 26, 2024
nmodl-references
Public
nmodl references
C++
•
Apache License 2.0
•0•1•0•0•Updated Nov 26, 2024Nov 26, 2024
nmodl
Public
Code Generation Framework For NEURON MODeling Language
hpc dsl neuroscience compilers code-generation neuron-simulator nmodl
C++
•
Apache License 2.0
•15•57•166•19•Updated Nov 26, 2024Nov 26, 2024
libsonata
Public
A python and C++ interface to the SONATA format
simulation sonata modelling circuit
C++
•
GNU Lesser General Public License v3.0
•12•12•26•2•Updated Nov 26, 2024Nov 26, 2024
accounting-service
Public
Python
•
Apache License 2.0
•0•0•2•3•Updated Nov 26, 2024Nov 26, 2024
thumbnail-generation-api
Public
Thumbnail Generation API
Python
•
Apache License 2.0
•1•1•1•0•Updated Nov 26, 2024Nov 26, 2024
MultiscaleRun
Public
Python package to run brain cells simulation at different scales
hpc neuroscience simulation-framework supercomputing molecular-modeling
Jupyter Notebook
•
GNU Lesser General Public License v3.0
•0•1•6•4•Updated Nov 26, 2024Nov 26, 2024
Molsys-STP-Prediction
Public
Jupyter Notebook
•
Apache License 2.0
•0•0•0•0•Updated Nov 26, 2024Nov 26, 2024
Molsys-Ion-Channel-Selector
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Nov 26, 2024Nov 26, 2024
molsys-multiscale-run-config-helper
Public
Python
•
Apache License 2.0
•0•0•0•0•Updated Nov 26, 2024Nov 26, 2024
emodel-generalisation
Public
Generalisation of electrical models of neurons with MCMC
electrophysiology neuron mcmc generalisation
Python
•
Other
•4•4•2•2•Updated Nov 26, 2024Nov 26, 2024
cell-density-validations
Public
Jupyter Notebook
•
Apache License 2.0
•0•0•0•0•Updated Nov 26, 2024Nov 26, 2024
BluePyEModel
Public
Blue Brain Python Electrical Modeling Pipeline
python workflow build simulation neuroscience modelling parameter analyse neuron optimisation
Python
•
Other
•5•6•0•0•Updated Nov 26, 2024Nov 26, 2024
aws-terrraform-deployment
Public
HCL
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Apache License 2.0
•0•0•0•0•Updated Nov 26, 2024Nov 26, 2024
platform-docs
Public
Apache License 2.0
•0•2•0•0•Updated Nov 26, 2024Nov 26, 2024
eFEL
Public
Electrophys Feature Extraction Library
neuroscience computational-neuroscience neurons electrophysiology python
Python
•
Other
•38•68•21•2•Updated Nov 26, 2024Nov 26, 2024
cortexetl
Public
Jupyter Notebook
•
Apache License 2.0
•0•2•0•0•Updated Nov 26, 2024Nov 26, 2024
BluePyEfe
Public
BluePyEfe: Blue Brain Python E-feature extraction
Python
•
Other
•13•15•2•2•Updated Nov 26, 2024Nov 26, 2024
axon-synthesis
Public
A package to synthesize artificial axons
morphology neuroscience axon neuroscience-methods
Python
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Apache License 2.0
•0•1•0•0•Updated Nov 25, 2024Nov 25, 2024