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openproblems-bio / openproblems Public

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Upgrade reporting (#916) #59

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Upgrade reporting (#916)

Upgrade reporting (#916) #59

Summary
Jobs
- List components to test
  
  Test (openproblems_v1_multimodal, datasets/loaders/multimodal, src/datasets/loaders/multimodal/op...
  
  Test (openproblems_neurips2021_bmmc, datasets/loaders/multimodal, src/datasets/loaders/multimodal...
  
  Test (openproblems_neurips2022_pbmc, datasets/loaders/multimodal, src/datasets/loaders/multimodal...
  
  Test (tenx_visium, datasets/loaders/spatial, src/datasets/loaders/spatial/tenx_visium/config.vsh....
  
  Test (zenodo_slidetags, datasets/loaders/spatial, src/datasets/loaders/spatial/zenodo_slidetags/c...
  
  Test (zenodo, datasets/loaders/spatial, src/datasets/loaders/spatial/zenodo/config.vsh.yaml, src/...
  
  Test (openproblems_v1, datasets/loaders/scrnaseq, src/datasets/loaders/scrnaseq/openproblems_v1/c...
  
  Test (cellxgene_census_from_source_h5ad, datasets/loaders/scrnaseq, src/datasets/loaders/scrnaseq...
  
  Test (cellxgene_census, datasets/loaders/scrnaseq, src/datasets/loaders/scrnaseq/cellxgene_census...
  
  Test (atac_tfidf, datasets/normalization, src/datasets/normalization/atac_tfidf/config.vsh.yaml, ...
  
  Test (prot_clr, datasets/normalization, src/datasets/normalization/prot_clr/config.vsh.yaml, src/...
  
  Test (log_cp, datasets/normalization, src/datasets/normalization/log_cp/config.vsh.yaml, src/data...
  
  Test (log_scran_pooling, datasets/normalization, src/datasets/normalization/log_scran_pooling/con...
  
  Test (sqrt_cp, datasets/normalization, src/datasets/normalization/sqrt_cp/config.vsh.yaml, src/da...
  
  Test (l1_sqrt, datasets/normalization, src/datasets/normalization/l1_sqrt/config.vsh.yaml, src/da...
  
  Test (subsample, datasets/processors, src/datasets/processors/subsample/config.vsh.yaml, src/data...
  
  Test (knn, datasets/processors, src/datasets/processors/knn/config.vsh.yaml, src/datasets/process...
  
  Test (pca, datasets/processors, src/datasets/processors/pca/config.vsh.yaml, src/datasets/process...
  
  Test (hvg, datasets/processors, src/datasets/processors/hvg/config.vsh.yaml, src/datasets/process...
  
  Test (svd, datasets/processors, src/datasets/processors/svd/config.vsh.yaml, src/datasets/process...
  
  Test (get_dataset_info, reporting, src/reporting/get_dataset_info/config.vsh.yaml, src/reporting/...
  
  Test (get_results, reporting, src/reporting/get_results/config.vsh.yaml, src/reporting/get_result...
  
  Test (get_task_info, reporting, src/reporting/get_task_info/config.vsh.yaml, src/reporting/get_ta...
  
  Test (get_metric_info, reporting, src/reporting/get_metric_info/config.vsh.yaml, src/reporting/ge...
  
  Test (generate_qc, reporting, src/reporting/generate_qc/config.vsh.yaml, src/reporting/generate_q...
  
  Test (get_method_info, reporting, src/reporting/get_method_info/config.vsh.yaml, src/reporting/ge...
  
  Test (create_component, project, src/project/create_component/config.vsh.yaml, src/project/create...
  
  Test (fetch_run_work_dir, project, src/project/fetch_run_work_dir/config.vsh.yaml, src/project/fe...
  
  Test (render_readme, project, src/project/render_readme/config.vsh.yaml, src/project/render_readm...
  
  Test (sync_resources, project, src/project/sync_resources/config.vsh.yaml, src/project/sync_resou...
  
  Test (upgrade_config, project, src/project/upgrade_config/config.vsh.yaml, src/project/upgrade_co...
  
  Test (extract_uns_metadata, utils, src/utils/extract_uns_metadata/config.vsh.yaml, src/utils/extr...
  
  Test (yaml_to_json, utils, src/utils/yaml_to_json/config.vsh.yaml, src/utils/yaml_to_json/, pytho...
  
  Test (decompress_gzip, utils, src/utils/decompress_gzip/config.vsh.yaml, src/utils/decompress_gzi...
  
  Test (check_dataset_with_schema, validation, src/validation/check_dataset_with_schema/config.vsh....
  
  Test (check_yaml_with_schema, validation, src/validation/check_yaml_with_schema/config.vsh.yaml, ...
Run details
- Usage
- Workflow file

Usage Workflow file

test / Test (openproblems_v1, datasets/loaders/scrnaseq, src/datasets/loaders/scrnaseq/openproblems_v1/c...

test / Test (openproblems_v1, datasets/loaders/scrnaseq, src/datasets/loaders/scrnaseq/openproblems_v1/c...

succeeded Nov 26, 2024 in 12m 18s

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