.gitignore

.Rproj.user
.Rhistory
.RData
.Ruserdata
.DS_Store
.Script.r
UCSCXenaShiny.Rcheck/
UCSCXenaShiny*.tar.gz
UCSCXenaShiny*.tgz
*.tex
data-raw/*.gz
inst/doc
data-raw/ds_PO.17.00073-1.xlsx
data-raw/CCLE-ABSOLUTE结果-10.1038:s41586-020-03133-3.xlsx
data-raw/infiltration_estimation_for_tcga.csv
data-raw/ncomms15180-s2.csv

data/pancan_MSI.rda
data/tcga_pan_immune_signature.rda
data/tcga_MSI.rda
data/tcga_stemness.rda
data/tcga_TIL.rda
data/tcga_tmb.rda
data/tcga_chr_alteration.rda


inst/extdata/pancan_MSI.rda
inst/extdata/tcga_pan_immune_signature.rda
inst/extdata/tcga_MSI.rda
inst/extdata/tcga_stemness.rda
inst/extdata/tcga_TIL.rda
inst/extdata/tcga_tmb.rda
inst/extdata/tcga_chr_alteration.rda
inst/extdata/ccle_expr_and_drug_response.rda
inst/extdata/transcript_identifier.rda

inst/extdata/toil_sig_score.rda
inst/extdata/tcga_PW.rda
inst/extdata/tcga_PW_meta.rda
inst/extdata/gtex_PW.rda
inst/extdata/tcga_PW_cross_raw.rda
inst/extdata/tcga_PW_cross.rda

inst/extdata/pancan_identifier_help.rda

inst/extdata/pcawg_PW.rda
inst/extdata/pcawg_TIL.rda
inst/extdata/pcawg_identifier.rda
inst/extdata/ccle_identifier.rda

inst/extdata/v2*



.idea
doc
Meta

ccle/CCLE_DepMap_18Q2_RNAseq_RPKM_20180502.gct
ccle/ccle_expr_and_drug_response.rds
data-raw/ccle/
data-raw/transcript_identifier.rda
data-raw/pcawg_donor_clinical_August2016_v9_sp
data-raw/pcawg_specimen_histology_August2016_v9
data-raw/project_code_sp
data-raw/sp_specimen_type
data-raw/survival_sp
data-raw/expressedPromoterCoordinates.probeMap
data-raw/pcawg_promoter_id.rda
inst/extdata/pcawg_promoter_id.rda
data-raw/ccle_drug_response_extend.rda
data-raw/CCLE_GNF_data_090613.xls
inst/extdata/ccle_drug_response_extend.rda
inst/extdata/pancancer_conserved_immune_subtype.rda
inst/extdata/toil_sig_score.rda
docs

inst/extdata/OP*