python-publish.yml

# # This workflow will upload a Python Package using Twine when a release is created
# # For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries

# name: Upload Python Package

# on:
#   release:
#     types: [created]

# jobs:
#   deploy:

#     runs-on: ubuntu-latest

#     steps:
#     - uses: actions/checkout@v2
#     - name: Set up Python
#       uses: actions/setup-python@v2
#       with:
#         python-version: '3.10'
#     - name: Install dependencies
#       run: |
#         python -m pip install --upgrade pip
#         pip install setuptools wheel twine cython pysam numpy
#     - name: Build and publish
#       env:
#         TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }}
#         TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
#       run: |
#         python setup.py sdist
#         twine upload dist/*


name: Publish Python Package to PyPI

on:
  release:
    types: [published]
  workflow_dispatch:

jobs:
  Publish:
    # prevents this action from running on forks
    if: github.repository == 'open2c/pairtools'

    runs-on: ubuntu-latest
    permissions:
      id-token: write

    steps:
      - name: Checkout
        uses: actions/checkout@v4

      - name: Setup Python
        uses: actions/setup-python@v5
        with:
          python-version: "3.x"

      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip wheel setuptools
          pip install numpy cython pysam
          pip install -r requirements-dev.txt
          pip install build

      - name: Build
        run: python -m build

      - name: Publish distribution 📦 to PyPI
        uses: pypa/gh-action-pypi-publish@release/v1