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chore(rebuild): Merge pull request #226 from yarikoptic/enh-codespell
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Add codespell to detect new typos and fix existing ones (even in prior versions since why not?)

SHA: 4535706
Reason: push, by @joshmoore

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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4 changes: 2 additions & 2 deletions 0.1/index.html
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<meta content="Bikeshed version 82ce88815, updated Thu Sep 7 16:33:55 2023 -0700" name="generator">
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<div class="head">
<img alt="OME logo (6 circles in a hexagon)" src="http://www.openmicroscopy.org/img/logos/ome-logomark.svg" style="float:right;width:42px;height:42px;">
<h1 class="p-name no-ref" id="title">Next-generation file formats (NGFF)</h1>
<h2 class="no-num no-toc no-ref heading settled" id="subtitle"><span class="content">Final Community Group Report, <time class="dt-updated" datetime="2024-01-31">31 January 2024</time></span></h2>
<h2 class="no-num no-toc no-ref heading settled" id="subtitle"><span class="content">Final Community Group Report, <time class="dt-updated" datetime="2024-02-12">12 February 2024</time></span></h2>
<div data-fill-with="spec-metadata">
<dl>
<dt>This version:
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<meta content="Bikeshed version 82ce88815, updated Thu Sep 7 16:33:55 2023 -0700" name="generator">
<link href="https://ngff.openmicroscopy.org/0.2/" rel="canonical">
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<meta content="453570650eaec7f9d925a331f61bcf91aed950d4" name="document-revision">
<style>/* Boilerplate: style-autolinks */
.css.css, .property.property, .descriptor.descriptor {
color: var(--a-normal-text);
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<div class="head">
<img alt="OME logo (6 circles in a hexagon)" src="http://www.openmicroscopy.org/img/logos/ome-logomark.svg" style="float:right;width:42px;height:42px;">
<h1 class="p-name no-ref" id="title">Next-generation file formats (NGFF)</h1>
<h2 class="no-num no-toc no-ref heading settled" id="subtitle"><span class="content">Final Community Group Report, <time class="dt-updated" datetime="2024-01-31">31 January 2024</time></span></h2>
<h2 class="no-num no-toc no-ref heading settled" id="subtitle"><span class="content">Final Community Group Report, <time class="dt-updated" datetime="2024-02-12">12 February 2024</time></span></h2>
<div data-fill-with="spec-metadata">
<dl>
<dt>This version:
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<c- p>],</c->
<c- f>"type"</c-><c- p>:</c-> <c- u>"gaussian"</c-><c- p>,</c->
<c- f>"metadata"</c-><c- p>:</c-> <c- p>{</c-> # <c- kc>t</c->he <c- kc>f</c->ields i<c- kc>n</c-> me<c- kc>ta</c->da<c- kc>ta</c-> depe<c- kc>n</c->d o<c- kc>n</c-> <c- kc>t</c->he dow<c- kc>ns</c->cali<c- kc>n</c->g impleme<c- kc>ntat</c->io<c- kc>n</c->
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<meta content="Bikeshed version 82ce88815, updated Thu Sep 7 16:33:55 2023 -0700" name="generator">
<link href="https://ngff.openmicroscopy.org/0.3/" rel="canonical">
<link href="https://www.w3.org/2008/site/images/favicon.ico" rel="icon">
<meta content="4428c9751cd895930fd9ddadc6493778031723c5" name="document-revision">
<meta content="453570650eaec7f9d925a331f61bcf91aed950d4" name="document-revision">
<style>/* Boilerplate: style-autolinks */
.css.css, .property.property, .descriptor.descriptor {
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<div class="head">
<p data-fill-with="logo"><a class="logo" href="https://www.w3.org/"> <img alt="W3C" height="48" src="https://www.w3.org/StyleSheets/TR/2021/logos/W3C" width="72"> </a> </p>
<h1 class="p-name no-ref" id="title">Next-generation file formats (NGFF)</h1>
<p id="w3c-state"><a href="https://www.w3.org/standards/types#CG-FINAL">Final Community Group Report</a>, <time class="dt-updated" datetime="2024-01-31">31 January 2024</time></p>
<p id="w3c-state"><a href="https://www.w3.org/standards/types#CG-FINAL">Final Community Group Report</a>, <time class="dt-updated" datetime="2024-02-12">12 February 2024</time></p>
<details open>
<summary>More details about this document</summary>
<div data-fill-with="spec-metadata">
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<c- p>],</c->
<c- f>"type"</c-><c- p>:</c-> <c- u>"gaussian"</c-><c- p>,</c->
<c- f>"metadata"</c-><c- p>:</c-> <c- p>{</c-> # <c- kc>t</c->he <c- kc>f</c->ields i<c- kc>n</c-> me<c- kc>ta</c->da<c- kc>ta</c-> depe<c- kc>n</c->d o<c- kc>n</c-> <c- kc>t</c->he dow<c- kc>ns</c->cali<c- kc>n</c->g impleme<c- kc>ntat</c->io<c- kc>n</c->
<c- f>"method"</c-><c- p>:</c-> <c- u>"skimage.transform.pyramid_gaussian"</c-><c- p>,</c-> # here<c- p>,</c-> <c- kc>t</c->he param<c- kc>ters</c-> passed <c- kc>t</c->o <c- kc>t</c->he skimage <c- kc>fun</c->c<c- kc>t</c->io<c- kc>n</c-> are give<c- kc>n</c->
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<meta content="Bikeshed version 82ce88815, updated Thu Sep 7 16:33:55 2023 -0700" name="generator">
<link href="https://ngff.openmicroscopy.org/0.4/" rel="canonical">
<link href="https://www.w3.org/2008/site/images/favicon.ico" rel="icon">
<meta content="4428c9751cd895930fd9ddadc6493778031723c5" name="document-revision">
<meta content="453570650eaec7f9d925a331f61bcf91aed950d4" name="document-revision">
<style>/* Boilerplate: style-autolinks */
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color: var(--a-normal-text);
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<div class="head">
<p data-fill-with="logo"><a class="logo" href="https://www.w3.org/"> <img alt="W3C" height="48" src="https://www.w3.org/StyleSheets/TR/2021/logos/W3C" width="72"> </a> </p>
<h1 class="p-name no-ref" id="title">Next-generation file formats (NGFF)</h1>
<p id="w3c-state"><a href="https://www.w3.org/standards/types#CG-FINAL">Final Community Group Report</a>, <time class="dt-updated" datetime="2024-01-31">31 January 2024</time></p>
<p id="w3c-state"><a href="https://www.w3.org/standards/types#CG-FINAL">Final Community Group Report</a>, <time class="dt-updated" datetime="2024-02-12">12 February 2024</time></p>
<details open>
<summary>More details about this document</summary>
<div data-fill-with="spec-metadata">
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encouraged (SHOULD) to support the reading of the data, but writing will usually
be optional (MAY). Examples of transitional metadata include custom additions by
implementations that are later submitted as a formal specification. (See <a href="#bf2raw">§ 3.2 "bioformats2raw.layout" (transitional)</a>) </p>
<p>Some of the JSON examples in this document include commments. However, these are only for
<p>Some of the JSON examples in this document include comments. However, these are only for
clarity purposes and comments MUST NOT be included in JSON objects.</p>
<h2 class="heading settled" data-level="2" id="on-disk"><span class="secno">2. </span><span class="content">On-disk (or in-cloud) layout</span><a class="self-link" href="#on-disk"></a></h2>
<p>An overview of the layout of an OME-Zarr fileset should make
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other <code>name</code> in the <code>rows</code> list. Care SHOULD be taken to avoid collisions on
case-insensitive filesystems (e.g. avoid using both <code>Aa</code> and <code>aA</code>).</p>
<p>The <code>plate</code> dictionary SHOULD contain a <code>version</code> key whose value MUST be a string specifying the
version of the plate specificaton.</p>
version of the plate specification.</p>
<p>The <code>plate</code> dictionary MUST contain a <code>wells</code> key whose value MUST be a list of JSON objects
defining the wells of the plate. Each well object MUST contain a <code>path</code> key whose value MUST
be a string specifying the path to the well subgroup. The <code>path</code> MUST consist of a <code>name</code> in
the <code>rows</code> list, a file separator (<code>/</code>), and a <code>name</code> from the <code>columns</code> list, in that order.
The <code>path</code> MUST NOT contain additional leading or trailing directories.
Each well object MUST contain both a <code>rowIndex</code> key whose value MUST be an integer identifying
the index into the <code>rows</code> list and a <code>columnIndex</code> key whose value MUST be an integer indentifying
the index into the <code>rows</code> list and a <code>columnIndex</code> key whose value MUST be an integer identifying
the index into the <code>columns</code> list. <code>rowIndex</code> and <code>columnIndex</code> MUST be 0-based. The <code>rowIndex</code>, <code>columnIndex</code>, and <code>path</code> MUST all refer to the same row/column pair.</p>
<p>For example the following JSON object defines a plate with two acquisitions and
6 wells (2 rows and 3 columns), containing up to 2 fields of view per acquisition.</p>
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<meta content="Bikeshed version 82ce88815, updated Thu Sep 7 16:33:55 2023 -0700" name="generator">
<link href="https://ngff.openmicroscopy.org/latest/" rel="canonical">
<link href="https://www.w3.org/2008/site/images/favicon.ico" rel="icon">
<meta content="4428c9751cd895930fd9ddadc6493778031723c5" name="document-revision">
<meta content="453570650eaec7f9d925a331f61bcf91aed950d4" name="document-revision">
<style>/* Boilerplate: style-autolinks */
.css.css, .property.property, .descriptor.descriptor {
color: var(--a-normal-text);
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<div class="head">
<img alt="OME logo (6 circles in a hexagon)" src="https://www.openmicroscopy.org/img/logos/ome-logomark.svg" style="float:right;width:42px;height:42px;">
<h1 class="p-name no-ref" id="title">Next-generation file formats (NGFF)</h1>
<h2 class="no-num no-toc no-ref heading settled" id="subtitle"><span class="content">Editor’s Draft, <time class="dt-updated" datetime="2024-01-31">31 January 2024</time></span></h2>
<h2 class="no-num no-toc no-ref heading settled" id="subtitle"><span class="content">Editor’s Draft, <time class="dt-updated" datetime="2024-02-12">12 February 2024</time></span></h2>
<div data-fill-with="spec-metadata">
<dl>
<dt>This version:
Expand Down Expand Up @@ -2168,7 +2168,7 @@ <h3 class="heading settled" id="document-conventions"><span class="content">Docu
encouraged (SHOULD) to support the reading of the data, but writing will usually
be optional (MAY). Examples of transitional metadata include custom additions by
implementations that are later submitted as a formal specification. (See <a href="#bf2raw">§ 2.2 "bioformats2raw.layout" (transitional)</a>) </p>
<p>Some of the JSON examples in this document include commments. However, these are only for
<p>Some of the JSON examples in this document include comments. However, these are only for
clarity purposes and comments MUST NOT be included in JSON objects.</p>
<h2 class="heading settled" data-level="1" id="on-disk"><span class="secno">1. </span><span class="content">On-disk (or in-cloud) layout</span><a class="self-link" href="#on-disk"></a></h2>
<p>An overview of the layout of an OME-Zarr fileset should make
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the <code>rows</code> list, a file separator (<code>/</code>), and a <code>name</code> from the <code>columns</code> list, in that order.
The <code>path</code> MUST NOT contain additional leading or trailing directories.
Each well object MUST contain both a <code>rowIndex</code> key whose value MUST be an integer identifying
the index into the <code>rows</code> list and a <code>columnIndex</code> key whose value MUST be an integer indentifying
the index into the <code>rows</code> list and a <code>columnIndex</code> key whose value MUST be an integer identifying
the index into the <code>columns</code> list. <code>rowIndex</code> and <code>columnIndex</code> MUST be 0-based. The <code>rowIndex</code>, <code>columnIndex</code>, and <code>path</code> MUST all refer to the same row/column pair.</p>
<p>For example the following JSON object defines a plate with two acquisitions and
6 wells (2 rows and 3 columns), containing up to 2 fields of view per acquisition.</p>
Expand Down

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