From 78c845f6a85e4156224413a7c8cbce62c048acaf Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Tue, 2 Jul 2024 15:27:06 +0300 Subject: [PATCH] Update release pipeline script Making ODK version configurable in release pipeline and making sure it is always up to date. --- .gitignore | 12 +++++++++++- src/ontology/build-without-imports.sh | 12 ++++++++---- 2 files changed, 19 insertions(+), 5 deletions(-) diff --git a/.gitignore b/.gitignore index 44f3ee1ca..793d08f79 100644 --- a/.gitignore +++ b/.gitignore @@ -100,4 +100,14 @@ src/translations/hp-tw-not-translated.babelon.tsv hp-fr.obo hp-fr.json hp-fr.owl -src/ontology/imports/.Rhistory \ No newline at end of file +src/ontology/imports/.Rhistory +src/ontology/reports/hpodiff_hp_2022-12-15_to_hp_2022-12-15.xlsx +src/ontology/reports/hpodiff_hp_2022-12-15_to_hp_2023-01-20.xlsx +src/ontology/reports/hpodiff_hp_2023-01-27_to_hp_2023-03-31.xlsx +src/ontology/reports/hpodiff_hp_2023-04-05_to_hp_2023-06-05.xlsx +src/ontology/reports/hpodiff_hp_2023-06-06_to_hp_2023-06-16.xlsx +src/ontology/reports/hpodiff_hp_2023-06-17_to_hp_2023-07-20.xlsx +src/ontology/reports/hpodiff_hp_2023-06-17_to_hp_2023-07-21.xlsx +src/ontology/reports/hpodiff_hp_2024-04-19_to_hp_2024-04-24.xlsx +src/ontology/reports/hpodiff_hp_2024-04-26_to_hp_2024-05-10.xlsx +src/ontology/reports/hpodiff_hp_2024-06-25_to_hp_2024-06-28.xlsx diff --git a/src/ontology/build-without-imports.sh b/src/ontology/build-without-imports.sh index 4c58588df..f9cc5f05f 100644 --- a/src/ontology/build-without-imports.sh +++ b/src/ontology/build-without-imports.sh @@ -2,8 +2,12 @@ set -e -sh run.sh make hpoa_clean -B +ODK=v1.5.2 + +echo docker pull obolibrary/odkfull:$ODK + +ODK_TAG=$ODK sh run.sh make hpoa_clean -B test -f tmp/hpo-annotation-data/README.md -sh run.sh make MIR=false IMP=false prepare_release -B -sh run.sh make hpoa -B -sh run.sh make hpo_diff -B +ODK_TAG=$ODK sh run.sh make MIR=false IMP=false prepare_release -B +ODK_TAG=$ODK sh run.sh make hpoa -B +ODK_TAG=$ODK sh run.sh make hpo_diff -B