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Create basic CHEBI slim #1

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matentzn opened this issue Sep 3, 2022 · 0 comments
Open

Create basic CHEBI slim #1

matentzn opened this issue Sep 3, 2022 · 0 comments

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@matentzn
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matentzn commented Sep 3, 2022

We propose the design of a CHEBI slim for use across OBO ontologies. The technique is the same as what we use for NCBITaxon and PRO Slims: We curate a seed file and extract a modules with that seed.

Arguments:

  • Chebi is enormously huge, which precludes the complete automation of release pipelines using GitHub actions.
  • Chebi's deposition system is sometimes a bit flaky which causes dozen of OBO release processes to break for OBO ontologies
  • Chebi QC is a bit weak, which occasionally results in broken release files, which in turn cause broken release pipelines, see also Chebi issue above.

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