adjust-the-hierarchy-CNS-nematoda-and-CNS-vertebrata

[AvolaAmg]

Fixes #2654

[AvolaAmg]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -base file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-11-13/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-master.owl/cl-base.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-base.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-11-13/cl-base.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-base-pr.owl/cl-base.owl

Ontology imports

Ontology annotations

CNS neuron (sensu Nematoda and Protostomia) http://purl.obolibrary.org/obo/CL_0000028

Removed

• CNS neuron (sensu Nematoda and Protostomia) SubClassOf neuron

Added

• CNS neuron (sensu Nematoda and Protostomia) SubClassOf central nervous system neuron

CNS neuron (sensu Vertebrata) http://purl.obolibrary.org/obo/CL_0000117

Removed

• CNS neuron (sensu Vertebrata) SubClassOf RO_0002202 some neuroblast (sensu Vertebrata)

• CNS neuron (sensu Vertebrata) SubClassOf neuron

• CNS neuron (sensu Vertebrata) SubClassOf BFO_0000002

Added

• CNS neuron (sensu Vertebrata) SubClassOf central nervous system neuron

anterior lateral line ganglion neuron http://purl.obolibrary.org/obo/CL_0008021

Removed

• anterior lateral line ganglion neuron IAO_0000115 "Any neuron that has its soma located in some anterior lateral line ganglion."

  • hasDbXref "FBC:Autogenerated"

• anterior lateral line ganglion neuron EquivalentTo neuron and (RO_0002100 some UBERON_2001391)

Added

• anterior lateral line ganglion neuron IAO_0000115 "Any peripheral nervous system neuron that has its soma located in some anterior lateral line ganglion."

  • hasDbXref "FBC:Autogenerated"

• anterior lateral line ganglion neuron EquivalentTo peripheral nervous system neuron and (RO_0002100 some UBERON_2001391)

columnar neuron http://purl.obolibrary.org/obo/CL_0000112

Removed

• columnar neuron SubClassOf RO_0002100 some CNS neuron (sensu Nematoda and Protostomia)

• columnar neuron SubClassOf central nervous system neuron

Added

• columnar neuron SubClassOf CNS neuron (sensu Nematoda and Protostomia)

immature neuron http://purl.obolibrary.org/obo/CL_4042028

Removed

• immature neuron SubClassOf CNS neuron (sensu Vertebrata)

Added

• immature neuron SubClassOf central nervous system neuron

lateral line ganglion neuron http://purl.obolibrary.org/obo/CL_2000031

Removed

• lateral line ganglion neuron EquivalentTo neuron and (RO_0002100 some UBERON_2000120)

• lateral line ganglion neuron SubClassOf neuron

Added

• lateral line ganglion neuron EquivalentTo peripheral nervous system neuron and (RO_0002100 some UBERON_2000120)

• lateral line ganglion neuron SubClassOf RO_0002162 some NCBITaxon_32443

• lateral line ganglion neuron SubClassOf peripheral nervous system neuron

• lateral line ganglion neuron SubClassOf BFO_0000002

posterior lateral line ganglion neuron http://purl.obolibrary.org/obo/CL_1000245

Removed

• posterior lateral line ganglion neuron IAO_0000115 "Any neuron that has its soma located in some posterior lateral line ganglion."

  • hasDbXref "FBC:Autogenerated"

• posterior lateral line ganglion neuron EquivalentTo neuron and (RO_0002100 some UBERON_2001314)

Added

• posterior lateral line ganglion neuron IAO_0000115 "Any peripheral nervous system neuron that has its soma located in some posterior lateral line ganglion."

  • hasDbXref "FBC:Autogenerated"

• posterior lateral line ganglion neuron EquivalentTo peripheral nervous system neuron and (RO_0002100 some UBERON_2001314)

primary interneuron (sensu Teleostei) http://purl.obolibrary.org/obo/CL_0000534

Removed

• primary interneuron (sensu Teleostei) SubClassOf interneuron

Added

• primary interneuron (sensu Teleostei) SubClassOf CNS interneuron

primary neuron (sensu Teleostei) http://purl.obolibrary.org/obo/CL_0000530

Removed

• primary neuron (sensu Teleostei) SubClassOf neuron

Added

• primary neuron (sensu Teleostei) SubClassOf central nervous system neuron

secondary neuron (sensu Teleostei) http://purl.obolibrary.org/obo/CL_0000535

Removed

• secondary neuron (sensu Teleostei) SubClassOf neuron

Added

• secondary neuron (sensu Teleostei) SubClassOf central nervous system neuron

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

CNS neuron (sensu Nematoda and Protostomia) http://purl.obolibrary.org/obo/CL_0000028

Removed

• CNS neuron (sensu Nematoda and Protostomia) SubClassOf neuron

Added

• CNS neuron (sensu Nematoda and Protostomia) SubClassOf central nervous system neuron

CNS neuron (sensu Vertebrata) http://purl.obolibrary.org/obo/CL_0000117

Removed

• CNS neuron (sensu Vertebrata) SubClassOf develops from some neuroblast (sensu Vertebrata)

• CNS neuron (sensu Vertebrata) SubClassOf neuron

Added

• CNS neuron (sensu Vertebrata) SubClassOf central nervous system neuron

anterior lateral line ganglion neuron http://purl.obolibrary.org/obo/CL_0008021

Removed

• anterior lateral line ganglion neuron EquivalentTo neuron and (has soma location some anterior lateral line ganglion)

Added

• anterior lateral line ganglion neuron EquivalentTo peripheral nervous system neuron and (has soma location some anterior lateral line ganglion)

columnar neuron http://purl.obolibrary.org/obo/CL_0000112

Removed

• columnar neuron SubClassOf neuron

• columnar neuron SubClassOf has soma location some CNS neuron (sensu Nematoda and Protostomia)

Added

• columnar neuron SubClassOf CNS neuron (sensu Nematoda and Protostomia)

• columnar neuron SubClassOf develops from some neuroblast (sensu Nematoda and Protostomia)

• columnar neuron SubClassOf has soma location some central nervous system

immature neuron http://purl.obolibrary.org/obo/CL_4042028

Removed

• immature neuron SubClassOf CNS neuron (sensu Vertebrata)

Added

• immature neuron SubClassOf central nervous system neuron

lateral line ganglion neuron http://purl.obolibrary.org/obo/CL_2000031

Removed

• lateral line ganglion neuron EquivalentTo neuron and (has soma location some lateral line ganglion)

Added

• lateral line ganglion neuron EquivalentTo peripheral nervous system neuron and (has soma location some lateral line ganglion)

• lateral line ganglion neuron SubClassOf in taxon some Teleostei

posterior lateral line ganglion neuron http://purl.obolibrary.org/obo/CL_1000245

Removed

• posterior lateral line ganglion neuron EquivalentTo neuron and (has soma location some posterior lateral line ganglion)

Added

• posterior lateral line ganglion neuron EquivalentTo peripheral nervous system neuron and (has soma location some posterior lateral line ganglion)

primary neuron (sensu Teleostei) http://purl.obolibrary.org/obo/CL_0000530

Added

• primary neuron (sensu Teleostei) SubClassOf has soma location some central nervous system

secondary neuron (sensu Teleostei) http://purl.obolibrary.org/obo/CL_0000535

Added

• secondary neuron (sensu Teleostei) SubClassOf has soma location some central nervous system

[AvolaAmg]

#gogoeditdiff