diff --git a/src/mappings/fbbt.sssom.tsv b/src/mappings/fbbt.sssom.tsv index a4c507fbf..1183babe8 100644 --- a/src/mappings/fbbt.sssom.tsv +++ b/src/mappings/fbbt.sssom.tsv @@ -1,17 +1,17 @@ #curie_map: -# CL: http://purl.obolibrary.org/obo/CL_ -# FBbt: http://purl.obolibrary.org/obo/FBbt_ -# ORCID: https://orcid.org/ -# obo: http://purl.obolibrary.org/obo/ -#mapping_set_id: http://purl.obolibrary.org/obo/fbbt/fbbt-mappings.sssom.tsv -#mapping_set_description: Mappings between the Drosophila Anatomy Ontology and foreign ontologies. +# CL: "http://purl.obolibrary.org/obo/CL_" +# FBbt: "http://purl.obolibrary.org/obo/FBbt_" +# ORCID: "https://orcid.org/" +# obo: "http://purl.obolibrary.org/obo/" +#mapping_set_id: "http://purl.obolibrary.org/obo/fbbt/fbbt-mappings.sssom.tsv" +#mapping_set_description: "Mappings between the Drosophila Anatomy Ontology and foreign ontologies." #creator_id: -# - ORCID:0000-0002-1373-1705 -# - ORCID:0000-0002-6095-8718 -#license: https://creativecommons.org/licenses/by/4.0/ -#subject_source: obo:fbbt.owl -#object_source: obo:cl.owl -#mapping_date: 2024-07-12 +# - "ORCID:0000-0002-1373-1705" +# - "ORCID:0000-0002-6095-8718" +#license: "https://creativecommons.org/licenses/by/4.0/" +#subject_source: "obo:fbbt.owl" +#object_source: "obo:cl.owl" +#mapping_date: "2024-07-12" subject_id subject_label predicate_id object_id mapping_justification FBbt:00000092 primordial germ cell semapv:crossSpeciesExactMatch CL:0000301 semapv:ManualMappingCuration FBbt:00000124 epithelial cell semapv:crossSpeciesExactMatch CL:0000066 semapv:ManualMappingCuration diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 1cb07a460..648b0d991 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -3143,6 +3143,7 @@ Declaration(Class(obo:GO_0036053)) Declaration(Class(obo:GO_0036376)) Declaration(Class(obo:GO_0042599)) Declaration(Class(obo:GO_0044316)) +Declaration(Class(obo:GO_0050893)) Declaration(Class(obo:GO_0070278)) Declaration(Class(obo:GO_0070483)) Declaration(Class(obo:GO_0097729)) @@ -15301,10 +15302,7 @@ AnnotationAssertion(oboInOwl:creation_date obo:CL_0002145 "2010-08-24T03:38:29Z" AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002145 "FMA:70542") AnnotationAssertion(Annotation(oboInOwl:hasDbXref ) Annotation(oboInOwl:hasDbXref "PMID:25386990") rdfs:comment obo:CL_0002145 "These cells possess numerous cilia on their surface, typically ranging from 200 to 300 per cell. The cilia vary in length, measuring between 6 to 7 μm in the upper airways (trachea) and becoming shorter, around 4 μm, in the smaller airways (terminal bronchioles). These cells form a two-layered 'coat' in the airway: the lower 'sol' layer is watery, allowing the cilia to beat in coordinated waves, while the upper 'gel' layer is thick and sticky, trapping inhaled particles.") AnnotationAssertion(rdfs:label obo:CL_0002145 "ciliated columnar cell of tracheobronchial tree") -SubClassOf(obo:CL_0002145 obo:CL_0002202) -SubClassOf(obo:CL_0002145 obo:CL_0005012) -SubClassOf(obo:CL_0002145 obo:CL_4030034) -SubClassOf(obo:CL_0002145 ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0031514)) +EquivalentClasses(obo:CL_0002145 ObjectIntersectionOf(obo:CL_0000075 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008397) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0031514) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0010007))) SubClassOf(obo:CL_0002145 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002209)) # Class: obo:CL_0002146 (clear cell of eccrine sweat gland) @@ -17334,12 +17332,11 @@ AnnotationAssertion(owl:deprecated obo:CL_0002331 "true"^^xsd:boolean) # Class: obo:CL_0002332 (ciliated cell of the bronchus) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:18757316") obo:IAO_0000115 obo:CL_0002332 "A ciliated cell of the bronchus.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:18757316") obo:IAO_0000115 obo:CL_0002332 "A multi-ciliated epithelial cell located in the bronchus epithelium, characterized by a columnar shape and motile cilia on its apical surface.") AnnotationAssertion(terms:contributor obo:CL_0002332 ) AnnotationAssertion(oboInOwl:creation_date obo:CL_0002332 "2010-09-20T02:21:12Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label obo:CL_0002332 "ciliated cell of the bronchus") -EquivalentClasses(obo:CL_0002332 ObjectIntersectionOf(obo:CL_0000064 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002031))) -SubClassOf(obo:CL_0002332 obo:CL_0002145) +EquivalentClasses(obo:CL_0002332 ObjectIntersectionOf(obo:CL_0000075 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002031) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0031514) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0010007))) # Class: obo:CL_0002333 (neural crest derived adipocyte) @@ -25059,7 +25056,7 @@ EquivalentClasses(obo:CL_1000245 ObjectIntersectionOf(obo:CL_0000540 ObjectSomeV AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:27864314") obo:IAO_0000115 obo:CL_1000271 "An epithelial cell that is part of the lung epithelium. This cell is characterised by the presence of cilia on its apical surface.") AnnotationAssertion(rdfs:label obo:CL_1000271 "lung ciliated cell") -EquivalentClasses(obo:CL_1000271 ObjectIntersectionOf(obo:CL_0000067 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000115))) +EquivalentClasses(obo:CL_1000271 ObjectIntersectionOf(obo:CL_0000075 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000115) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0031514) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0010007))) # Class: obo:CL_1000272 (lung secretory cell) @@ -31059,12 +31056,11 @@ EquivalentClasses(obo:CL_4030033 ObjectIntersectionOf(obo:CL_0000115 ObjectSomeV # Class: obo:CL_4030034 (respiratory ciliated cell) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:18757316") Annotation(oboInOwl:hasDbXref "PMID:21364219") obo:IAO_0000115 obo:CL_4030034 "A ciliated cell of the respiratory system. Ciliated cells are present in airway epithelium.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:18757316") Annotation(oboInOwl:hasDbXref "PMID:21364219") obo:IAO_0000115 obo:CL_4030034 "A multi-ciliated epithelial cell located in the respiratory tract epithelium, characterized by a columnar shape and motile cilia on its apical surface.") AnnotationAssertion(terms:date obo:CL_4030034 "2023-01-25T11:06:01Z"^^xsd:dateTime) AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4030034 "ciliated cell of the respiratory tract") AnnotationAssertion(rdfs:label obo:CL_4030034 "respiratory ciliated cell") -EquivalentClasses(obo:CL_4030034 ObjectIntersectionOf(obo:CL_0000064 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004802))) -SubClassOf(obo:CL_4030034 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001004)) +EquivalentClasses(obo:CL_4030034 ObjectIntersectionOf(obo:CL_0000075 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004802) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0031514) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0010007))) # Class: obo:CL_4030035 (dental pulp stem cell) @@ -31983,12 +31979,12 @@ EquivalentClasses(obo:CL_4033054 ObjectIntersectionOf(obo:CL_0000000 ObjectSomeV # Class: obo:CL_4033055 (airway submucosal gland duct ciliated cell) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:17707699") Annotation(oboInOwl:hasDbXref "PMID:30864819") obo:IAO_0000115 obo:CL_4033055 "A ciliated cell that is part of a ciliated duct of an airway submucosal gland.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:17707699") Annotation(oboInOwl:hasDbXref "PMID:30864819") obo:IAO_0000115 obo:CL_4033055 "A multi-ciliated epithelial cell located in ciliated duct of an airway submucosal gland, characterized by a columnar shape and motile cilia on its apical surface.") AnnotationAssertion(terms:contributor obo:CL_4033055 ) AnnotationAssertion(terms:contributor obo:CL_4033055 ) AnnotationAssertion(terms:date obo:CL_4033055 "2023-09-08T10:32:27Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label obo:CL_4033055 "airway submucosal gland duct ciliated cell") -EquivalentClasses(obo:CL_4033055 ObjectIntersectionOf(obo:CL_0000064 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_8410077) ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_8600014))) +EquivalentClasses(obo:CL_4033055 ObjectIntersectionOf(obo:CL_0000075 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_8410077) ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_8600014) ObjectSomeValuesFrom(obo:BFO_0000051 obo:GO_0031514) ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0010007))) # Class: obo:CL_4033056 (onychocyte) diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl index f1b2e074b..2e4639e1a 100644 --- a/src/ontology/imports/merged_import.owl +++ b/src/ontology/imports/merged_import.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2024-11-05") + +Annotation(owl:versionInfo "2024-11-07") Declaration(Class()) Declaration(Class()) diff --git a/src/patterns/definitions.owl b/src/patterns/definitions.owl index d901aaa94..7c051e22a 100644 --- a/src/patterns/definitions.owl +++ b/src/patterns/definitions.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2024-11-05") + +Annotation(owl:versionInfo "2024-11-07") Declaration(Class()) Declaration(Class())