From 349a05dfccc07db82a039d1fb51fd870b1a28704 Mon Sep 17 00:00:00 2001 From: aleixpuig <94959119+aleixpuigb@users.noreply.github.com> Date: Tue, 22 Aug 2023 14:52:42 +0100 Subject: [PATCH 1/3] Addresses #2119 NTR perivascular cell Fixes #2119 NTR perivascular cell --- src/ontology/cl-edit.owl | 12 ++++++++++++ 1 file changed, 12 insertions(+) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 88269bfda..49993f411 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -2992,6 +2992,7 @@ Declaration(Class(obo:CL_4033050)) Declaration(Class(obo:CL_4033051)) Declaration(Class(obo:CL_4033052)) Declaration(Class(obo:CL_4033053)) +Declaration(Class(obo:CL_4033054)) Declaration(Class(obo:CL_4040000)) Declaration(Class(obo:CL_4040001)) Declaration(Class(obo:CL_4040002)) @@ -6560,6 +6561,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000359 "vascular smooth mus AnnotationAssertion(rdfs:label obo:CL_0000359 "vascular associated smooth muscle cell") EquivalentClasses(obo:CL_0000359 ObjectIntersectionOf(obo:CL_0000192 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002049))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000359 obo:CL_0000192) +SubClassOf(obo:CL_0000359 obo:CL_4033054) # Class: obo:CL_0000360 (morula cell) @@ -11354,6 +11356,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0000881 "Markers: Human/monkey, mice: CD AnnotationAssertion(rdfs:label obo:CL_0000881 "perivascular macrophage") EquivalentClasses(obo:CL_0000881 ObjectIntersectionOf(obo:CL_0000878 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001981) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001483) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001889) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001925))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0000881 obo:CL_0000878) +SubClassOf(obo:CL_0000881 obo:CL_4033054) # Class: obo:CL_0000882 (thymic medullary macrophage) @@ -22629,6 +22632,7 @@ AnnotationAssertion(oboInOwl:inSubset obo:CL_0008034 obo:CL_4033054 ) +AnnotationAssertion( obo:CL_4033054 "2023-08-22T13:40:28Z"^^xsd:dateTime) +AnnotationAssertion(rdfs:label obo:CL_4033054 "perivascular cell") +EquivalentClasses(obo:CL_4033054 ObjectIntersectionOf(obo:CL_0000003 ObjectSomeValuesFrom(obo:RO_0002220 obo:UBERON_0002049))) + # Class: obo:CL_4040000 (glial restricted tripotential precursor cell) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:10719353") obo:IAO_0000115 obo:CL_4040000 "A glial precursor cell that generates oligodendrocytes and type-1 and type-2 astrocytes. It has been shown in some mammals that this cell type may express A2B5, nestin, FGFR-1, FGFR-2, FGFR-3, PLP, and DM-20 antigens. Unlike oligodendrocyte precursor cell, it does not initially express PDGFR-alpha and can differentiate into both type-1 and type-2 astrocytes.") From 7d943304aeedd3aa16d9dca8f7fe8c7536e07628 Mon Sep 17 00:00:00 2001 From: aleixpuig <94959119+aleixpuigb@users.noreply.github.com> Date: Wed, 23 Aug 2023 10:32:04 +0100 Subject: [PATCH 2/3] Fix grammar error --- src/ontology/cl-edit.owl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 49993f411..a00f47f60 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -31849,7 +31849,7 @@ SubClassOf(obo:CL_4033053 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001792 # Class: obo:CL_4033054 (perivascular cell) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:24928499") Annotation(oboInOwl:hasDbXref "PMID:27889329") obo:IAO_0000115 obo:CL_4033054 "A cell that is adjacent to a vessel. A perivascular cell plays a crucial roles in maintaining vascular function and tissue homeostasis. This cell regulates vessel integrity and flow dynamics.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:24928499") Annotation(oboInOwl:hasDbXref "PMID:27889329") obo:IAO_0000115 obo:CL_4033054 "A cell that is adjacent to a vessel. A perivascular cell plays a crucial role in maintaining vascular function and tissue homeostasis. This cell regulates vessel integrity and flow dynamics.") AnnotationAssertion( obo:CL_4033054 ) AnnotationAssertion( obo:CL_4033054 "2023-08-22T13:40:28Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label obo:CL_4033054 "perivascular cell") From acdb1b3ac2c3aa79c6e54887b3d769d1bedd28a2 Mon Sep 17 00:00:00 2001 From: aleixpuig <94959119+aleixpuigb@users.noreply.github.com> Date: Wed, 23 Aug 2023 11:16:44 +0100 Subject: [PATCH 3/3] Improve definition This cell regulates -> This cell type regulates --- src/ontology/cl-edit.owl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index a00f47f60..5f52e2818 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -31849,7 +31849,7 @@ SubClassOf(obo:CL_4033053 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0001792 # Class: obo:CL_4033054 (perivascular cell) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:24928499") Annotation(oboInOwl:hasDbXref "PMID:27889329") obo:IAO_0000115 obo:CL_4033054 "A cell that is adjacent to a vessel. A perivascular cell plays a crucial role in maintaining vascular function and tissue homeostasis. This cell regulates vessel integrity and flow dynamics.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:24928499") Annotation(oboInOwl:hasDbXref "PMID:27889329") obo:IAO_0000115 obo:CL_4033054 "A cell that is adjacent to a vessel. A perivascular cell plays a crucial role in maintaining vascular function and tissue homeostasis. This cell type regulates vessel integrity and flow dynamics.") AnnotationAssertion( obo:CL_4033054 ) AnnotationAssertion( obo:CL_4033054 "2023-08-22T13:40:28Z"^^xsd:dateTime) AnnotationAssertion(rdfs:label obo:CL_4033054 "perivascular cell")