diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 96422deac..d7ab0f891 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -18678,6 +18678,10 @@ AnnotationAssertion(terms:contributor obo:CL_0002466 ) EquivalentClasses(obo:CL_0002466 ObjectIntersectionOf(obo:CL_0002465 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001010) ObjectSomeValuesFrom(obo:RO_0002104 obo:GO_0042613) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001006) ObjectSomeValuesFrom(obo:RO_0015016 obo:PR_000001013))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002466 obo:CL_0002465) @@ -22870,6 +22874,10 @@ AnnotationAssertion(terms:contributor obo:CL_0009006 ) EquivalentClasses(obo:CL_0009006 ObjectIntersectionOf(obo:CL_0000164 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002108))) # Class: obo:CL_0009007 (gastrointestinal tract (lamina propria) macrophage of small intestine) @@ -22943,6 +22951,10 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009012 "transit amplifying AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009012 "transit-amplifying cell of small intestine") AnnotationAssertion(oboInOwl:inSubset obo:CL_0009012 pato:location_grouping) AnnotationAssertion(rdfs:label obo:CL_0009012 "transit amplifying cell of small intestine") +AnnotationAssertion(Annotation(dc:license "http://creativecommons.org/licenses/by/4.0/") Annotation(rdfs:comment "Figure depicts a cross section of intestinal villi in the small intestine , including the crypts of Lieberkhun (seen here as ‘crypt’), as well as the layer specific locations of cells that exist within the gastrointestinal tract. Layers depicted here include epithelium (rows of cells bordering villus), submucosa (white space below the epithelium containing networks of neurons and ganglia depicted in pink), muscularis mucosae (blue layer), muscularis propria (referred to here as muscle layer). + +ISC: Intestinal Stem Cell +TA: Transit Amplifying Cells") foaf:depiction obo:CL_0009012 ) EquivalentClasses(obo:CL_0009012 ObjectIntersectionOf(obo:CL_4047017 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001241))) SubClassOf(obo:CL_0009012 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002250)) @@ -22994,6 +23006,10 @@ AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0009017 "crypt stem cell of AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009017 "stem cell of small intestine crypt of Lieberkuhn") AnnotationAssertion(oboInOwl:inSubset obo:CL_0009017 pato:location_grouping) AnnotationAssertion(rdfs:label obo:CL_0009017 "intestinal crypt stem cell of small intestine") +AnnotationAssertion(Annotation(dc:license "http://creativecommons.org/licenses/by/4.0/") Annotation(rdfs:comment "Figure depicts a cross section of intestinal villi in the small intestine, including the crypts of Lieberkuhn (seen here as ‘crypt’), as well as the layer specific locations of cells that exist within the gastrointestinal tract. Layers depicted here include epithelium (rows of cells bordering villus), submucosa (white space below the epithelium containing networks of neurons and ganglia depicted in pink), muscularis mucosae (blue layer), muscularis propria (referred to here as muscle layer). + +ISC: Intestinal Stem Cell +TA: Transit Amplifying Cells") foaf:depiction obo:CL_0009017 ) EquivalentClasses(obo:CL_0009017 ObjectIntersectionOf(obo:CL_0002250 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001241))) # Class: obo:CL_0009018 (lymphocyte of large intestine lamina propria) @@ -23276,6 +23292,10 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009044 "small intestine lam AnnotationAssertion(oboInOwl:inSubset obo:CL_0009044 pato:location_grouping) AnnotationAssertion(rdfs:comment obo:CL_0009044 "This is a general grouping term created for use in the EMBL-EBI Single Cell Expression Atlas anatomograms. Please use a more specific cell type term for annotation if possible, given the information available to you.") AnnotationAssertion(rdfs:label obo:CL_0009044 "lymphocyte of small intestine lamina propria") +AnnotationAssertion(Annotation(dc:license "http://creativecommons.org/licenses/by/4.0/") Annotation(rdfs:comment "Figure depicts a cross section of intestinal villi in the small intestine, including the crypts of Lieberkuhn (seen here as ‘crypt’), as well as the layer specific locations of cells that exist within the gastrointestinal tract. Layers depicted here include epithelium (rows of cells bordering villus), submucosa (white space below the epithelium containing networks of neurons and ganglia depicted in pink), muscularis mucosae (blue layer), muscularis propria (referred to here as muscle layer). + +ISC: Intestinal Stem Cell +TA: Transit Amplifying Cells") foaf:depiction obo:CL_0009044 ) EquivalentClasses(obo:CL_0009044 ObjectIntersectionOf(obo:CL_0000542 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001238))) # Class: obo:CL_0009045 (B cell of medullary sinus of lymph node) @@ -23620,6 +23640,10 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009080 "brush cell of epith AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009080 "brush cell of small intestine") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0009080 "tuft cell of epithelium of small intestine") AnnotationAssertion(rdfs:label obo:CL_0009080 "tuft cell of small intestine") +AnnotationAssertion(Annotation(terms:license "http://creativecommons.org/licenses/by/4.0/") Annotation(rdfs:comment "Figure depicts a cross section of intestinal villi in the small intestine, including the crypts of Lieberkuhn (seen here as ‘crypt’), as well as the layer specific locations of cells that exist within the gastrointestinal tract. Layers depicted here include epithelium (rows of cells bordering villus), submucosa (white space below the epithelium containing networks of neurons and ganglia depicted in pink), muscularis mucosae (blue layer), muscularis propria (referred to here as muscle layer). + +ISC: Intestinal Stem Cell +TA: Transit Amplifying Cells") foaf:depiction obo:CL_0009080 ) EquivalentClasses(obo:CL_0009080 ObjectIntersectionOf(obo:CL_0019032 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002108))) # Class: obo:CL_0009081 (specified double negative thymocyte (Homo sapiens)) @@ -25083,6 +25107,10 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000275 "FMA:15050") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "FMA:15050") oboInOwl:hasExactSynonym obo:CL_1000275 "non-striated muscle fiber of small intestine") AnnotationAssertion(rdfs:label obo:CL_1000275 "smooth muscle cell of small intestine") +AnnotationAssertion(Annotation(dc:license "http://creativecommons.org/licenses/by/4.0/") Annotation(rdfs:comment "Figure depicts a cross section of intestinal villi in the small intestine, including the crypts of Lieberkuhn (seen here as ‘crypt’), as well as the layer specific locations of cells that exist within the gastrointestinal tract. Layers depicted here include epithelium (rows of cells bordering villus), submucosa (white space below the epithelium containing networks of neurons and ganglia depicted in pink), muscularis mucosae (blue layer), muscularis propria (referred to here as muscle layer). + +ISC: Intestinal Stem Cell +TA: Transit Amplifying Cells") foaf:depiction obo:CL_1000275 ) EquivalentClasses(obo:CL_1000275 ObjectIntersectionOf(obo:CL_0002504 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002108))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000275 obo:CL_0002504) @@ -25562,6 +25590,10 @@ EquivalentClasses(obo:CL_1000333 ObjectIntersectionOf(obo:CL_0000313 ObjectSomeV AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_1000334 "An enterocyte that is part of the epithelium of small intestine.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000334 "FMA:263086") AnnotationAssertion(rdfs:label obo:CL_1000334 "enterocyte of epithelium of small intestine") +AnnotationAssertion(Annotation(dc:license "http://creativecommons.org/licenses/by/4.0/") Annotation(rdfs:comment "Figure depicts a cross section of intestinal villi in the small intestine, including the crypts of Lieberkuhn (seen here as ‘crypt’), as well as the layer specific locations of cells that exist within the gastrointestinal tract. Layers depicted here include epithelium (rows of cells bordering villus), submucosa (white space below the epithelium containing networks of neurons and ganglia depicted in pink), muscularis mucosae (blue layer), muscularis propria (referred to here as muscle layer). + +ISC: Intestinal Stem Cell +TA: Transit Amplifying Cells") foaf:depiction obo:CL_1000334 ) EquivalentClasses(obo:CL_1000334 ObjectIntersectionOf(obo:CL_0000584 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001902))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000334 obo:CL_0000584) @@ -25629,6 +25661,10 @@ SubClassOf(obo:CL_1000342 obo:CL_1000339) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") obo:IAO_0000115 obo:CL_1000343 "A paneth cell that is part of the epithelium of small intestine.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000343 "FMA:263104") AnnotationAssertion(rdfs:label obo:CL_1000343 "paneth cell of epithelium of small intestine") +AnnotationAssertion(Annotation(dc:license "http://creativecommons.org/licenses/by/4.0/") Annotation(rdfs:comment "Figure depicts a cross section of intestinal villi in the small intestine , including the crypts of Lieberkuhn (seen here as ‘crypt’), as well as the layer specific locations of cells that exist within the gastrointestinal tract. Layers depicted here include epithelium (rows of cells bordering villus), submucosa (white space below the epithelium containing networks of neurons and ganglia depicted in pink), muscularis mucosae (blue layer), muscularis propria (referred to here as muscle layer). + +ISC: Intestinal Stem Cell +TA: Transit Amplifying Cells") foaf:depiction obo:CL_1000343 ) EquivalentClasses(obo:CL_1000343 ObjectIntersectionOf(obo:CL_0000510 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001902))) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000343 obo:CL_0000510) SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000343 obo:CL_0002254)