From 2097f22b6688c6b4d297d58e366294b849ec07ed Mon Sep 17 00:00:00 2001 From: CEastwood <116108977+Caroline-99@users.noreply.github.com> Date: Fri, 8 Nov 2024 13:24:24 +0000 Subject: [PATCH] Fixes #2652 - Added GO terms for colonocytes + Updated definition (#2741) * Fixes #2652 Added the GO terms for colonocytes and updated the textual definition and references to align with the new logical axioms * Updated the definition and GO term --- src/ontology/cl-edit.owl | 6 ++++-- src/ontology/imports/go_terms.txt | 1 + 2 files changed, 5 insertions(+), 2 deletions(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 6a1388532..3499d38c2 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -3139,6 +3139,7 @@ Declaration(Class(obo:D96882F1-8709-49AB-BCA9-772A67EA6C33)) Declaration(Class(obo:GO_0001552)) Declaration(Class(obo:GO_0005903)) Declaration(Class(obo:GO_0005927)) +Declaration(Class(obo:GO_0019626)) Declaration(Class(obo:GO_0031045)) Declaration(Class(obo:GO_0036053)) Declaration(Class(obo:GO_0036376)) @@ -25652,13 +25653,14 @@ SubClassOf(obo:CL_1000346 obo:CL_0002071) # Class: obo:CL_1000347 (colonocyte) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:34497389") obo:IAO_0000115 obo:CL_1000347 "A columnar cell of the colon that is part of the colonic epithelium.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:16870803") Annotation(oboInOwl:hasDbXref "PMID:23821742") Annotation(oboInOwl:hasDbXref "PMID:34497389") obo:IAO_0000115 obo:CL_1000347 "An enterocyte (absorptive epithelial cell) of the colonic epithelium, characterized by a columnar shape. This cell is responsible for the absorption, transport, and metabolization of short-chain fatty acids (SCFAs) produced by gut bacteria, as well as the transport and absorption of water and electrolytes.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1000347 "FMA:263114") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_1000347 "enterocyte of colon") AnnotationAssertion(oboInOwl:hasNarrowSynonym obo:CL_1000347 "vacuolar absorptive cell of epithelium of colon") AnnotationAssertion(rdfs:label obo:CL_1000347 "colonocyte") EquivalentClasses(obo:CL_1000347 ObjectIntersectionOf(obo:CL_0002071 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000397))) -SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_1000347 obo:CL_0002071) +SubClassOf(obo:CL_1000347 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0019626)) +SubClassOf(obo:CL_1000347 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0035377)) # Class: obo:CL_1000348 (basal cell of epithelium of trachea) diff --git a/src/ontology/imports/go_terms.txt b/src/ontology/imports/go_terms.txt index 8c76ed7eb..3d85cc7dc 100644 --- a/src/ontology/imports/go_terms.txt +++ b/src/ontology/imports/go_terms.txt @@ -16,3 +16,4 @@ GO:0045428 GO:0005927 GO:0050893 GO:0001552 +GO:0019626 \ No newline at end of file