deprecated container formats

[LinearParadox]

Description of the bug

some of the docker containers used in the pipeline are in old deprecated docker formats, and docker doesn't want to pull them:

Command used and terminal output

$ nextflow run nf-core/atacseq -profile docker -params-file config.yaml

Command error:
  Unable to find image 'quay.io/biocontainers/fastqc:0.11.9--0' locally
  0.11.9--0: Pulling from biocontainers/fastqc
  docker: [DEPRECATION NOTICE] Docker Image Format v1 and Docker Image manifest version 2, schema 1 support is disabled by default and will be removed in an upcoming release. Suggest the author of quay.io/biocontainers/fastqc:0.11.9--0 to upgrade the image to the OCI Format or Docker Image manifest v2, schema 2. More information at https://docs.docker.com/go/deprecated-image-specs/.
  See 'docker run --help'.

Relevant files

No response

System information

No response

[JoseEspinosa]

I am afraid that if you want to use the current stable version of the pipeline you would need to use an older version of Docker, otherwise, you can give a try to dev version by adding it to your Nextflow command -r dev.