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bam_csi_index parameter for ATACSeq #343

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BianyunY-ACRD opened this issue Dec 20, 2023 · 0 comments
Open

bam_csi_index parameter for ATACSeq #343

BianyunY-ACRD opened this issue Dec 20, 2023 · 0 comments
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enhancement New feature or request

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@BianyunY-ACRD
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Description of feature

I had success when running atacseq (-r 2.1.2) for samples with small genome. When I tried to run other samples with big genome and one of the chromosome size is larger than 500Mb. I set the "--bam_csi_index". However, I still got error message "....cannot be stored in a bai index. Try using a csi index". It seems the atacseq pipeline does not implement the bam_csi_index parameter. It would be greatly appreciated if this parameter can be implemented in atacseq pipeline.

@BianyunY-ACRD BianyunY-ACRD added the enhancement New feature or request label Dec 20, 2023
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