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2021-11-29.build5742
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@azat-badretdin azat-badretdin released this 02 Dec 15:32
· 154 commits to master since this release
2021-11-29.build5742
94c97cf

This release is based on pgap-5.3. It includes the following features and bug fixes:

  • Updated the structural annotation algorithm to facilitate future extensibility. This change results in improvements in structural annotation, driven by higher weight of GeneMarkS2+ ab initio models at loci where only weak evidence are found (such as low identity and coverage protein alignments or partial HMM hits).
  • Switched to Linux kernel 3 compilation of GeneMarkS2+
  • Upgraded PFAM models to PFAM 34
  • Adjusted the minimum percent identity thresholds used by the Average Nucleotide Identity tool for several species, including Listeria monocytogenes, Campylobacter lari, and Vibrio vulnificus.
  • Improved reporting of errors in input YAML files
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