Skip to content

Commit

Permalink
Added template directory to branch
Browse files Browse the repository at this point in the history
  • Loading branch information
Douglas Slotta committed Oct 4, 2018
1 parent 93574ff commit c70311e
Show file tree
Hide file tree
Showing 3 changed files with 115 additions and 0 deletions.
20 changes: 20 additions & 0 deletions user_genome/genome.fa
Original file line number Diff line number Diff line change
@@ -0,0 +1,20 @@
>Replace this file with the multifasta of your sequence!
GATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACA
GATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACA
GATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACA
GATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACA
GATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACA
GATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACA
GATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACA
GATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACA
GATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACA
>Replace this file with the multifasta of your sequence!
GATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACA
GATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACA
GATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACA
GATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACA
GATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACA
GATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACA
GATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACA
GATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACA
GATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACAGATTACA
87 changes: 87 additions & 0 deletions user_genome/genome.template
Original file line number Diff line number Diff line change
@@ -0,0 +1,87 @@
Submit-block ::= {
contact {
contact {
name name {
last "Doe",
first "John",
middle "J",
initials "J.D."
},
affil std {
affil "The Institute",
city "Commonwealth",
sub "MA",
country "USA",
street "31459 Infinity Dr",
postal-code "02114"
}
}
},
cit {
authors {
names std {
{
name name {
last "Author",
first "One",
middle "the",
initials "O.A."
}
},
{
name name {
last "Author",
first "Two",
middle "the",
initials "T.A."
}
},
{
name name {
last "Author",
first "Last",
middle "the",
initials "L.A."
}
}
},
affil std {
affil "The Institute",
city "Commonwealth",
sub "MA",
country "USA",
street "31459 Infinity Dr",
postal-code "02114"
}
},
medium other,
date std {
year 2018,
month 3,
day 15
}
}
}
Seqdesc ::= source {
org {
taxname "Escherichia coli",
db {
{
db "taxon",
tag id 562
}
},
orgname {
name binomial {
genus "Escherichia",
species "coli"
},
attrib "specified",
gcode 11,
div "BCT"
}
}
}
Seqdesc ::= molinfo {
biomol genomic
}
8 changes: 8 additions & 0 deletions user_genome/genome.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,8 @@
submit_block_template:
class: File
location: example_genome/genome.template
fasta:
class: File
location: example_genome/genome.fa
taxid: 562
gc_assm_name: ecoli_example

0 comments on commit c70311e

Please sign in to comment.