From b38b0070edf910984f29a4a495b5dfa525b8b305 Mon Sep 17 00:00:00 2001 From: "Badretdin, Azat" Date: Mon, 29 Nov 2021 14:12:40 -0500 Subject: [PATCH] typo committed in PGAP-3506 fixed; we should have been using slightly different pct_identity... here: pct_identity_gap; JIRA: PGAP-3521; PGAP-3506; PGAP-5701 --- protein_alignment/align_filter.cwl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/protein_alignment/align_filter.cwl b/protein_alignment/align_filter.cwl index 373bb6e..7de87be 100644 --- a/protein_alignment/align_filter.cwl +++ b/protein_alignment/align_filter.cwl @@ -16,7 +16,7 @@ requirements: baseCommand: align_filter -arguments: [ -filter, "pct_identity_gapopen_only >= 50 AND ( (query_start<=20 AND SUB(query_length, query_end)<=20) OR pct_identity_gapopen_only >= 60 ) AND (SUB(subject_end, subject_start) > 90 || SUB(subject_end, subject_start) > MUL(query_length,1.5) || num_ident >=60) AND (query_length > 30 || (pct_identity_gapopen_only >= 80 AND SUB(subject_end, subject_start) >= MUL(query_length,2.4)))", -ifmt, seq-align, -nogenbank ] +arguments: [ -filter, "pct_identity_gapopen_only >= 50 AND ( (query_start<=20 AND SUB(query_length, query_end)<=20) OR pct_identity_gapopen_only >= 60 ) AND (SUB(subject_end, subject_start) > 90 || SUB(subject_end, subject_start) > MUL(query_length,1.5) || num_ident >=60) AND (query_length > 30 || (pct_identity_gap >= 80 AND SUB(subject_end, subject_start) >= MUL(query_length,2.4)))", -ifmt, seq-align, -nogenbank ] inputs: asn_cache: