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Unable to create a GTAX database #2

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nparisot1 opened this issue Apr 17, 2024 · 0 comments
Open

Unable to create a GTAX database #2

nparisot1 opened this issue Apr 17, 2024 · 0 comments

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@nparisot1
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Dear GTAX team,
I am trying to create a GTAX database following the procedure described in your documentation but I have errors with the filter_metadata_zip script.

It seems that there are errors when loading the jsonl files:

v = assemblies_tmp.setdefault(d['organism']['taxId'], [])
KeyError: 'organism'

And indeed the only keys loaded in the d dictionary are: ['annotationInfo', 'assemblyInfo', 'assemblyStats', 'organismName', 'strain', 'taxId'].

Thank you for your help

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