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Dear GTAX team,
I am trying to create a GTAX database following the procedure described in your documentation but I have errors with the filter_metadata_zip script.
It seems that there are errors when loading the jsonl files:
v = assemblies_tmp.setdefault(d['organism']['taxId'], [])
KeyError: 'organism'
And indeed the only keys loaded in the d dictionary are: ['annotationInfo', 'assemblyInfo', 'assemblyStats', 'organismName', 'strain', 'taxId'].
Thank you for your help
The text was updated successfully, but these errors were encountered:
Dear GTAX team,
I am trying to create a GTAX database following the procedure described in your documentation but I have errors with the filter_metadata_zip script.
It seems that there are errors when loading the jsonl files:
And indeed the only keys loaded in the
d
dictionary are:['annotationInfo', 'assemblyInfo', 'assemblyStats', 'organismName', 'strain', 'taxId']
.Thank you for your help
The text was updated successfully, but these errors were encountered: