Fixes for github actions #60
Workflow file for this run
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| name: Build elastic-blast PEX files | |
| on: [push, pull_request] | |
| jobs: | |
| build-single: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9"] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Build PEX file | |
| run: | | |
| pip3 install wheel | |
| pip3 install -r requirements/test.txt | |
| pex --python-shebang='/usr/bin/env python3' --disable-cache . -r requirements/base.txt --python=python${{ matrix.python-version }} -c elastic-blast -o elastic-blast | |
| ./elastic-blast --version | |
| ls -l elastic-blast | |
| md5sum elastic-blast > elastic-blast.md5 | |
| - name: Create tarball | |
| run: tar -czvf elastic-blast-no-suffix.tar.gz elastic-blast elastic-blast.md5 | |
| - name: Produce downloadable artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: elastic-blast-no-suffix | |
| path: elastic-blast-no-suffix.tar.gz | |
| retention-days: 1 | |
| build-multiple: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11"] | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Build PEX file | |
| run: | | |
| pip3 install wheel | |
| pip3 install -r requirements/test.txt | |
| pex --python-shebang='/usr/bin/env python3' --disable-cache . -r requirements/base.txt --python=python${{ matrix.python-version }} -c elastic-blast -o elastic-blast${{ matrix.python-version }} | |
| ./elastic-blast${{ matrix.python-version }} --version | |
| ls -l ./elastic-blast${{ matrix.python-version }} | |
| md5sum elastic-blast${{ matrix.python-version }} > elastic-blast${{ matrix.python-version }}.md5 | |
| - name: Create tarball | |
| run: tar -czvf elastic-blast${{ matrix.python-version }}.tar.gz elastic-blast${{ matrix.python-version }} elastic-blast${{ matrix.python-version }}.md5 | |
| - name: Produce downloadable artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: elastic-blast-${{ matrix.python-version }} | |
| path: elastic-blast${{ matrix.python-version }}.tar.gz | |
| retention-days: 1 | |
| produce-archive: | |
| needs: [build-single, build-multiple] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Download artifacts | |
| uses: actions/download-artifact@v3 | |
| - name: Display structure of downloaded files | |
| run: ls -lR | |
| - name: Create tarball | |
| run: | | |
| tar axvf elastic-blast-no-suffix/elastic-blast-no-suffix.tar.gz | |
| tar axvf elastic-blast-3.8/elastic-blast3.8.tar.gz | |
| tar axvf elastic-blast-3.9/elastic-blast3.9.tar.gz | |
| tar axvf elastic-blast-3.10/elastic-blast3.10.tar.gz | |
| rm -fvr elastic-blast-*.tar.gz | |
| tar -czvf ~/elastic-blast.tar.gz elastic-blast elastic-blast*md5 elastic-blast3.* | |
| - name: 'Upload Artifact' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: elastic-blast | |
| path: ~/elastic-blast.tar.gz | |