diff --git a/omim2obo/namespaces.py b/omim2obo/namespaces.py index 4cac0aa..ad89f41 100644 --- a/omim2obo/namespaces.py +++ b/omim2obo/namespaces.py @@ -192,7 +192,7 @@ GENBANK = Namespace('http://www.ncbi.nlm.nih.gov/nuccore/') # NCBI nucleotide sequences # HGNC = Namespace('http://www.genenames.org/cgi-bin/gene_symbol_report?hgnc_id=') # pre drupal site # HGNC = Namespace('https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:') # HUGO Gene Nomenclature Committee (Human) -HGNC = Namespace('https://identifiers.org/hgnc/') # HUGO Gene Nomenclature Committee (Human) +HGNC = Namespace('http://identifiers.org/hgnc/') # HUGO Gene Nomenclature Committee (Human) HGNC_symbol = Namespace('https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/') # HUGO Gene Nomenclature Committee (Human) IMPC = Namespace('https://www.mousephenotype.org/data/genes/') # International Mouse Phenotyping Consortium (MGI:nnn) IMPC_PIPE = Namespace('https://www.mousephenotype.org/impress/PipelineInfo?id=') # diff --git a/sparql/mondo-omim-genes.sparql b/sparql/mondo-omim-genes.sparql index c69422f..d3db8d2 100644 --- a/sparql/mondo-omim-genes.sparql +++ b/sparql/mondo-omim-genes.sparql @@ -19,7 +19,7 @@ WHERE owl:someValuesFrom ?omim_gene ] . ?omim_gene skos:exactMatch ?hgnc_id . - FILTER(STRSTARTS(STR(?hgnc_id), "https://identifiers.org/hgnc/")) + FILTER(STRSTARTS(STR(?hgnc_id), "http://identifiers.org/hgnc/")) FILTER(STRSTARTS(STR(?mondo_id), "http://purl.obolibrary.org/obo/MONDO_")) BIND(REPLACE(STR(?omim_disease), "https://omim.org/entry/", "OMIM:") AS ?omim_disease_xref) }