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level3.txt
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level3.txt
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2549 CAGE RNA profiling
896 3'UTR 454 sequencing pilot - Level 1 Piano Piano RACE raw sequences Caenorhabditis elegans N2 whole organism mixed: L1 larva, L2 larva, L3 larva, L4 larva, adult, embryo 9/4/09 11/4/09 released GSM443959
214 RTPCR gene model
582 ChIP-seq chromatin Target=pha-4;AbName=eGFP
586 ChIP-seq chromatin Target=pha-4;AbName=RNA Polymerase II
777 ChIP-seq chromatin modification Target=H3K4Me1;AbName=H3K4Me1
846 ChIP-seq chromatin Target=RNA Polymerase II;AbName=Covance_8WG16:14861301
2416 ChIP-seq chromatin Target=dpy-27;AbName=eGFP
2755 ChIP-seq replication factors Target=Orc2;AbName=dORC2
2638 ChIP-seq chromatin Target=CTCF;AbName=CTCF-N
2628 ChIP-seq chromatin Target=HDAC4;AbName=HDAC4a-493
43 ChIP-chip chromatin Target=htz-1;AbName=HTZ-1;Array=86bp;ArrayPlatform=Nimblegen
279 ChIP-chip chromatin Target=Chro;AbName=Chro(Chriz)WR;Array=38bp;ArrayPlatform=Affymetrix
317 ChIP-chip chromatin modification Target=H4K16Ac;AbName=H4K16Ac L;Array=38bp;ArrayPlatform=Affymetrix
2525 ChIP-chip chromatin SaltConcentration=150-600mM ;Array=65bp;ArrayPlatform=Nimblegen
668 tiling array: DNA replication timing Array=470bp;ArrayPlatform=Agilent
709 tiling array: DNA origins of replication Array=470bp;ArrayPlatform=Agilent
2384 tiling array: DNA copy number variation Array=470bp;ArrayPlatform=Agilent
539 tiling array: RNA transcription Array=38bp;ArrayPlatform=Affymetrix
2741 RNA-seq RNA profiling
2744 RNA-seq RNA profiling Target=Ago1;AbName=Ago1
2551 S2 Copy Number Variation MacAlpine MacAlpine DNA-seq copy number variation Drosophila melanogaster S2-DRSC 12/22/09 1/5/10 released GSE19956, GSM498668, GSM498669
910 RNAi CG8144 S2-DRSC RNA-Seq Bowtie Celniker Graveley RNA-seq, RNAi RNA profiling RNAiTarget=ps Drosophila melanogaster S2-DRSC 9/4/09 10/8/09 approved GSM461179
2557 mass-spec_091015 Waterston MacCoss Mass spec RNA profiling Caenorhabditis elegans CB1489, N2 whole organism mixed: L1 larva, L2 larva, L3 larva, L4 larva, adult, dauer larva, embryo, larva, newly molted young adult hermaphrodite 1/1/10 9/27/10 approved mass_spec_091015.gff3,
2688 Splice Junction Annotation Embryo 0-2h Celniker Graveley Computational annotation gene model Drosophila melanogaster y; cn bw sp whole organism embryo: embryonic stage, pre-blastoderm stage, embryonic stage 1-2 1/27/10 2/15/10 released BS40_all_unique_junctions_jctn_summary_offset_entropy_histogram_.txt.GFF3 SRR023199, SRR023659, SRR023663, SRR023671, SRR023747, SRR023755, SRR024013, SRR027110
2967 MB9 Celniker Brent Computational annotation gene model Drosophila melanogaster 6/4/10 10/4/10 released dm3_run12_withTSS_v3.gff3, MB9_v3.gff3, MB8/models/MB08.gff3
2745 UTRome_V2_3UTRs_multiple_evidences Piano Piano Computational annotation gene model Caenorhabditis elegans 1/29/10 2/18/10 released CEUP_UTRs.gff3 GSM446652
2550 Directed cDNA Full Insert Sequencing Celniker Celniker cDNA sequencing RNA profiling Sequences=1055 Drosophila melanogaster Oregon-R-P2, y; cn bw sp adult, adult head, embryo mixed: adult stage, embryonic stage, larval stage, prepupal stage, pupal stage, embryonic stage 17 12/18/09 2/15/10 released MIP.gff