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test_lift.chadoxml
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test_lift.chadoxml
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<!-- source chadoxml file -->
<chadoxml>
<feature id="feature_1270">
<name>II</name>
</feature>
<feature id="feature_IV">
<name>IV</name>
</feature>
<feature id="feature_ten">
<name>X</name>
</feature>
<feature id="feature_3">
<name>III</name>
</feature>
<feature id="feature_6048">
<name>abi3100_ce3_20070626.A08_ce3.trans.8888446_070626.r</name>
</feature>
<feature id="feature_2">
<name>Another Feature Name</name>
</feature>
<!-- FEATURE LOCS ----->
<!-- non-overlapping MMS -->
<featureloc>
<feature_id>feature_2</feature_id>
<srcfeature_id>feature_IV</srcfeature_id>
<fmin>12344</fmin>
<fmax>12355</fmax>
<strand>0</strand>
</featureloc>
<featureloc>
<feature_id>feature_2</feature_id>
<srcfeature_id>feature_IV</srcfeature_id>
<fmin>16422614</fmin>
<fmax>16422620</fmax>
<strand>0</strand>
</featureloc>
<featureloc>
<feature_id>feature_2</feature_id>
<srcfeature_id>feature_IV</srcfeature_id>
<fmin>16424500</fmin>
<fmax>16424503</fmax>
<strand>0</strand>
</featureloc>
<!-- feature > mismatch on both ends -->
<featureloc>
<feature_id>feature_2</feature_id>
<srcfeature_id>feature_IV</srcfeature_id>
<fmin>16426789</fmin>
<fmax>16426836</fmax>
<strand>0</strand>
</featureloc>
<featureloc>
<feature_id>feature_2</feature_id>
<srcfeature_id>feature_ten</srcfeature_id>
<fmin>15981149</fmin>
<fmax>15981160</fmax>
<strand>0</strand>
</featureloc>
<featureloc>
<feature_id>feature_2</feature_id>
<srcfeature_id>feature_IV</srcfeature_id>
<fmin>16449589</fmin>
<fmax>16449598</fmax>
<strand>0</strand>
</featureloc>
<featureloc>
<feature_id>feature_2</feature_id>
<srcfeature_id>feature_IV</srcfeature_id>
<fmin>16440863</fmin>
<fmax>16440944</fmax>
<strand>0</strand>
</featureloc>
<!-- mismatch > feature on both ends --->
<featureloc>
<feature_id>feature_2</feature_id>
<srcfeature_id>feature_IV</srcfeature_id>
<fmin>16440899</fmin>
<fmax>16440920</fmax>
<strand>0</strand>
</featureloc>
<featureloc>
<feature_id>feature_2</feature_id>
<srcfeature_id>feature_IV</srcfeature_id>
<fmin>16436332</fmin>
<fmax>16436343</fmax>
<strand>0</strand>
</featureloc>
<featureloc>
<feature_id>feature_2</feature_id>
<srcfeature_id>feature_IV</srcfeature_id>
<fmin>16436332</fmin>
<fmax>16436334</fmax>
<strand>0</strand>
</featureloc>
<!-- mismatch overlaps left end of feature -->
<featureloc>
<feature_id>feature_2</feature_id>
<srcfeature_id>feature_IV</srcfeature_id>
<fmin>16426799</fmin>
<fmax>16426835</fmax>
<strand>0</strand>
</featureloc>
<featureloc>
<feature_id>feature_2</feature_id>
<srcfeature_id>feature_IV</srcfeature_id>
<fmin>16424049</fmin>
<fmax>16424061</fmax>
<strand>0</strand>
</featureloc>
<featureloc>
<feature_id>feature_2</feature_id>
<srcfeature_id>feature_IV</srcfeature_id>
<fmin>16422608</fmin>
<fmax>16422618</fmax>
<strand>0</strand>
</featureloc>
<!-- mismatch overlaps right end of feature -->
<featureloc>
<feature_id>feature_2</feature_id>
<srcfeature_id>feature_IV</srcfeature_id>
<fmin>16436329</fmin>
<fmax>16436335</fmax>
<strand>0</strand>
</featureloc>
<featureloc>
<feature_id>feature_2</feature_id>
<srcfeature_id>feature_IV</srcfeature_id>
<fmin>16440859</fmin>
<fmax>16440869</fmax>
<strand>0</strand>
</featureloc>
<featureloc>
<feature_id>feature_2</feature_id>
<srcfeature_id>feature_IV</srcfeature_id>
<fmin>16422604</fmin>
<fmax>16422609</fmax>
<strand>0</strand>
</featureloc>
</chadoxml>