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env_no_build.yaml
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env_no_build.yaml
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name: primekg
channels:
- huggingface
- pytorch
- defaults
- conda-forge
- pyg
dependencies:
- _libgcc_mutex=0.1
- _openmp_mutex=4.5
- anyio=3.6.1
- appdirs=1.4.4
- argon2-cffi=21.3.0
- argon2-cffi-bindings=21.2.0
- asttokens=2.0.8
- attrs=22.1.0
- automat=20.2.0
- babel=2.10.3
- backcall=0.2.0
- backports=1.1
- backports.functools_lru_cache=1.6.4
- bcrypt=3.2.0
- blas=1.0
- bleach=5.0.1
- boost-cpp=1.69.0
- bottleneck=1.3.4
- brotli=1.0.9
- brotli-bin=1.0.9
- brotlipy=0.7.0
- bs4=4.11.1
- bzip2=1.0.8
- ca-certificates=2022.9.14
- certifi=2022.9.14
- cffi=1.15.0
- cgal-cpp=4.14
- charset-normalizer=2.1.1
- click=8.0.4
- colorama=0.4.5
- constantly=15.1.0
- cryptography=36.0.0
- cssselect=1.1.0
- cudatoolkit=10.2.89
- cycler=0.11.0
- dataclasses=0.8
- dbus=1.13.18
- debugpy=1.6.3
- decorator=5.1.1
- defusedxml=0.7.1
- eigen=3.4.0
- entrypoints=0.4
- executing=1.0.0
- expat=2.4.9
- ffmpeg=4.3.2
- filelock=3.8.0
- flit-core=3.7.1
- fontconfig=2.14.0
- fonttools=4.37.3
- freetype=2.11.0
- gettext=0.21.0
- giflib=5.2.1
- glib=2.69.1
- gmp=6.2.1
- gnutls=3.6.15
- gst-plugins-base=1.14.0
- gstreamer=1.14.0
- gudhi=3.0.0
- hyperlink=21.0.0
- icu=58.2
- idna=3.4
- importlib_metadata=4.11.3
- importlib_resources=5.9.0
- incremental=21.3.0
- intel-openmp=2021.4.0
- ipykernel=6.14.0
- ipython=8.4.0
- ipython_genutils=0.2.0
- itemadapter=0.7.0
- itemloaders=1.0.6
- jedi=0.18.1
- jinja2=3.1.2
- jmespath=1.0.1
- joblib=1.2.0
- jpeg=9d
- json5=0.9.6
- jupyter_client=7.3.4
- jupyter_core=4.11.1
- jupyter_server=1.18.1
- jupyterlab=3.4.7
- jupyterlab_pygments=0.2.2
- jupyterlab_server=2.15.1
- kiwisolver=1.3.1
- lame=3.100
- lcms2=2.12
- ld_impl_linux-64=2.38
- libblas=3.9.0
- libbrotlicommon=1.0.9
- libbrotlidec=1.0.9
- libbrotlienc=1.0.9
- libcblas=3.9.0
- libcxx=12.0.0
- libcxxabi=12.0.0
- libffi=3.3
- libgcc-ng=12.1.0
- libgfortran=3.0.0
- libgfortran-ng=12.1.0
- libgfortran5=12.1.0
- libiconv=1.16
- libidn2=2.3.2
- liblapack=3.9.0
- libpng=1.6.37
- libprotobuf=3.19.1
- libsodium=1.0.18
- libstdcxx-ng=12.1.0
- libtasn1=4.16.0
- libtiff=4.2.0
- libunistring=0.9.10
- libuuid=2.32.1
- libuv=1.40.0
- libwebp=1.2.2
- libwebp-base=1.2.2
- libxcb=1.15
- libxml2=2.9.12
- libxslt=1.1.34
- llvm-openmp=12.0.1
- lxml=4.8.0
- lz4-c=1.9.3
- markupsafe=2.1.1
- matplotlib-inline=0.1.6
- mkl=2021.4.0
- mkl-service=2.4.0
- mkl_fft=1.3.1
- mkl_random=1.2.2
- mpfr=4.1.0
- munkres=1.1.4
- nbclassic=0.4.3
- nbconvert-core=7.0.0
- nbconvert-pandoc=7.0.0
- ncurses=6.3
- nest-asyncio=1.5.5
- nettle=3.7.3
- nodejs=12.4.0
- notebook=6.4.12
- notebook-shim=0.1.0
- numexpr=2.8.3
- openh264=2.1.1
- openssl=1.1.1q
- packaging=21.3
- pandoc=2.19.2
- pandocfilters=1.5.0
- parsel=1.6.0
- parso=0.8.3
- pcre=8.45
- pexpect=4.8.0
- pickleshare=0.7.5
- pillow=9.0.1
- pip=21.2.4
- pkgutil-resolve-name=1.3.10
- prometheus_client=0.14.1
- prompt-toolkit=3.0.31
- protego=0.2.1
- psutil=5.9.2
- ptyprocess=0.7.0
- pure_eval=0.2.2
- pyasn1=0.4.8
- pyasn1-modules=0.2.8
- pycparser=2.21
- pydispatcher=2.0.5
- pyg=2.3
- pygments=2.13.0
- pyopenssl=22.0.0
- pyparsing=3.0.9
- pyqt=5.9.2
- pyrsistent=0.18.1
- pysocks=1.7.1
- python=3.8.13
- python-dateutil=2.8.2
- python-fastjsonschema=2.16.2
- python_abi=3.8
- pytorch=1.12.1
- pytorch-mutex=1.0
- pytz=2022.2.1
- pyyaml=6.0
- pyzmq=24.0.1
- qt=5.9.7
- queuelib=1.5.0
- readline=8.1.2
- regex=2022.3.15
- requests=2.28.1
- requests-file=1.5.1
- sacremoses=master
- scrapy=2.6.1
- send2trash=1.8.0
- service_identity=18.1.0
- sip=4.19.13
- six=1.16.0
- sniffio=1.3.0
- soupsieve=2.3.2.post1
- sqlite=3.38.2
- stack_data=0.5.0
- tbb=2021.5.0
- terminado=0.15.0
- threadpoolctl=3.1.0
- tinycss2=1.1.1
- tk=8.6.11
- tldextract=3.3.1
- tokenizers=0.10.3
- tomli=2.0.1
- tornado=6.1
- tqdm=4.64.1
- traitlets=5.4.0
- transformers=4.11.3
- twisted=22.2.0
- typing-extensions=4.1.1
- typing_extensions=4.1.1
- unicodedata2=14.0.0
- urllib3=1.26.9
- w3lib=1.22.0
- wcwidth=0.2.5
- websocket-client=1.4.1
- wheel=0.37.1
- x264=1!161.3030
- xz=5.2.5
- yaml=0.2.5
- zeromq=4.3.4
- zipp=3.7.0
- zlib=1.2.12
- zope=1.0
- zope.interface=5.4.0
- zstd=1.4.9
- pip:
- absl-py==1.3.0
- accelerate==0.14.0
- aiobotocore==2.5.0
- aiohttp==3.8.3
- aioitertools==0.11.0
- aiosignal==1.3.1
- alabaster==0.7.13
- anndata==0.9.1
- antlr4-python3-runtime==4.8
- async-timeout==4.0.2
- autopep8==2.0.2
- beautifulsoup4==4.11.2
- biopython==1.81
- biothings-client==0.3.0
- bitarray==2.7.3
- bitsandbytes==0.35.4
- botocore==1.29.76
- cachetools==5.2.0
- captum==0.6.0
- class-resolver==0.3.10
- cloudpickle==2.2.1
- cmappy==4.0.1
- contourpy==1.0.7
- cython==0.29.24
- dask==2023.5.0
- datamol==0.10.0
- datasets==2.6.1
- denoising-diffusion-pytorch==0.31.1
- descriptastorus==2.6.1
- dgl==1.1.1
- dglgo==0.0.2
- dgllife==0.3.2
- diffusers==0.4.1
- dill==0.3.5.1
- dnspython==2.4.1
- docker-pycreds==0.4.0
- docopt==0.6.2
- docutils==0.19
- easydict==1.10
- einops==0.6.0
- ema-pytorch==0.0.10
- et-xmlfile==1.1.0
- fair-esm==1.0.2
- fastapi==0.87.0
- fastjsonschema==2.16.1
- ffmpy==0.3.0
- frozenlist==1.3.3
- fsspec==2023.4.0
- ftfy==6.1.1
- future==0.18.3
- fuzzywuzzy==0.18.0
- gcsfs==2023.4.0
- gdown==4.5.3
- gitdb==4.0.9
- gitpython==3.1.27
- goatools==1.3.1
- google-api-core==2.11.0
- google-auth==2.14.1
- google-auth-oauthlib==0.4.6
- google-cloud-core==2.3.2
- google-cloud-storage==2.8.0
- google-crc32c==1.5.0
- google-resumable-media==2.5.0
- googleapis-common-protos==1.59.0
- googledrivedownloader==0.4
- gradio==3.10.0
- grpcio==1.50.0
- h11==0.12.0
- h5py==3.7.0
- httpcore==0.15.0
- httpx==0.23.1
- huggingface-hub==0.11.0
- hydra-core==1.0.7
- hyperopt==0.2.7
- imagesize==1.4.1
- importlib-metadata==6.6.0
- ipython-genutils==0.2.0
- ipywidgets==7.7.2
- isodate==0.6.1
- isort==5.12.0
- jsonpickle==1.5.2
- jsonschema==4.8.0
- jupyterlab-unfold==0.2.2
- jupyterlab-widgets==1.1.1
- kaleido==0.2.1
- linkify-it-py==1.0.3
- littleutils==0.2.2
- llvmlite==0.40.0
- lmdb==1.3.0
- locket==1.0.0
- loguru==0.7.0
- markdown==3.4.1
- markdown-it-py==2.1.0
- matplotlib==3.6.3
- matplotlib-venn==0.11.9
- mdit-py-plugins==0.3.1
- mdurl==0.1.2
- mistune==0.8.4
- mock==5.0.1
- molecupy==1.1.0
- more-itertools==9.0.0
- multidict==6.0.2
- multiprocess==0.70.13
- munch==2.5.0
- mwparserfromhell==0.6.4
- mygene==3.2.2
- natsort==8.4.0
- nbclient==0.6.6
- nbconvert==6.5.0
- nbdime==3.1.1
- nbformat==5.4.0
- nbresuse==0.4.0
- networkx==3.1
- ninja==1.10.2.3
- numba==0.57.0
- numpy==1.24.3
- nvidia-htop==1.0.5
- oauthlib==3.2.2
- ogb==1.3.4
- omegaconf==2.0.6
- omnicanvas==0.3.0
- openpyxl==3.1.1
- orjson==3.8.1
- outdated==0.2.1
- pandas==2.0.1
- pandas-flavor==0.6.0
- paramiko==2.12.0
- parasail==1.3.4
- partd==1.4.0
- pathtools==0.1.2
- patsy==0.5.3
- platformdirs==3.3.0
- plotly==5.9.0
- pmapper==1.0.3
- portalocker==2.7.0
- promise==2.3
- protobuf==3.19.6
- py-cpuinfo==9.0.0
- py4j==0.10.9.7
- pyarrow==10.0.0
- pycodestyle==2.10.0
- pycryptodome==3.15.0
- pydantic==1.10.2
- pydot==1.4.2
- pydrmetrics==0.0.7
- pydub==0.25.1
- pygtop==2.1.5
- pymongo==4.4.1
- pynacl==1.5.0
- pynndescent==0.5.7
- pystow==0.4.9
- pytdc==0.3.8
- python-louvain==0.16
- python-multipart==0.0.5
- rdflib==6.2.0
- rdkit==2022.9.5
- rdkit-pypi==2022.9.5
- requests-oauthlib==1.3.1
- responses==0.18.0
- rfc3986==1.5.0
- rsa==4.9
- ruamel-yaml==0.17.21
- ruamel-yaml-clib==0.2.7
- s3fs==2023.4.0
- sacrebleu==2.3.1
- sacred==0.8.4
- scanpy==1.9.3
- scikit-allel==1.3.5
- scikit-learn==1.2.1
- scipy==1.10.1
- seaborn==0.12.2
- selfies==2.1.1
- seml==0.3.7
- sentry-sdk==1.9.0
- session-info==1.0.0
- setproctitle==1.3.0
- setuptools==59.8.0
- setuptools-scm==7.1.0
- shortuuid==1.0.9
- smmap==5.0.0
- snowballstemmer==2.2.0
- sphinx==6.2.0
- sphinxcontrib-applehelp==1.0.4
- sphinxcontrib-devhelp==1.0.2
- sphinxcontrib-htmlhelp==2.0.1
- sphinxcontrib-jsmath==1.0.1
- sphinxcontrib-qthelp==1.0.3
- sphinxcontrib-serializinghtml==1.1.5
- starlette==0.21.0
- statsmodels==0.13.5
- stdlib-list==0.9.0
- subword-nmt==0.3.8
- tabulate==0.9.0
- tenacity==8.0.1
- tensorboard==2.9.1
- tensorboard-data-server==0.6.1
- tensorboard-plugin-wit==1.8.1
- tensorboardx==2.6
- termcolor==1.1.0
- toolz==0.12.0
- torch==1.12.0
- torchdrug==0.2.0
- torchmetrics==0.11.4
- typer==0.7.0
- tzdata==2023.3
- uc-micro-py==1.0.1
- umap-learn==0.5.3
- upsetplot==0.6.1
- uvicorn==0.19.0
- wandb==0.12.21
- webencodings==0.5.1
- websockets==10.4
- werkzeug==2.2.2
- widgetsnbextension==3.6.1
- wrapt==1.15.0
- xarray==2023.1.0
- xlsxwriter==3.0.8
- xmltodict==0.13.0
- xxhash==3.1.0
- yarl==1.8.1
prefix: /home/yeh803/.conda/envs/primekg