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TODO
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TODO
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- read matrix market format, optionally gzipped.
https://www.gnu.org/software/autoconf-archive/ax_check_zlib.html
- integration/unit test
mcxarray
mcxload (ahem, see testing)
binary format
autogenerate. idempotency, some sort of invariant check.
mcxload axes
- auto-extension of tabs
- keeping track of maximum index seen (symmetric/directed)
- strict / restrict / extend
- dropping/ignoring of data (restrict)
- labels vs numbers
- symmetric vs directed domains (tabs)
- symmetric vs directed edges
- values vs novalues
- with --expect-values should they always be present?
auto-detect values should be possible.
- lots of fixmes in code
- per-node and per-cluster modularity
- mcxsubs reimplement; mcxi and/or lex/yacc. cellatac one use case.
- consider also mcxalter/tf()
' statsReset moved. fresh mcl valgrind
' check mclvIdxVal offset use
- mclxVectorDispatch; matrix argument not const. This for e.g. mclxSymReduceDispatch,
but perhaps consider the latter and similar (knn reductions) for purge. certainly shrug etc.
- update/point README compile instructions
- mcx{load,dump} restrict tab: report intersect and difference (useful sanity-check feedback for user).
- hidden options in clm close should be part of other clm mode.
- why are mclxSub and mclxChangeDomains not more alike?
(physical moving of column vectors in the latter).
? matrix read on clustering (intra-edges only -- help --force-connected)
! mclExpandVector / mclvKBar should use pval rather than float?
- mcxi uses 'int' for integers. Why not long?
- fast colsizes in mcx query with binary format.
- mcx query -vary-threshold with 20x21 matrix L == 0 - better NA.
- (clxdo) easy way to generate top and bottom clusterings.
paste <(seq 0 1 $((10-1))) <(yes 0 | head -n 10) | recol 21 | mcxload -123 -