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LIST OF CHANGES
release 39.1
- compensate for loss of split_stats role in npg_qc
(see https://github.com/wtsi-npg/npg_qc/pull/342)
release 39.0
- added tests for 'purpose'
- ml_warehouse lims driver refinments to ensure db connection is
propagated
- add run/flowcell level caching st:api:lims driver
release 38.0
- autonomous ml_warehouse driver which takes query by run id
- extended ml warehouse loader to load final qc values
release 37.10
- Corrected calculation of unexpected_tags_percent
release 37.9
- Try to figure out id_run from IseqProductMetrics if a flowcell
identifier is provided.
- daemon to continiously repair foreign keys from iseq_product_metrics
table in ml warehouse to iseq_flowcell table
release 37.8
- Load unexpected tag and chimeric fields in iseq_product_metric and
iseq_run_lane_metric tables
release 37.7
- wh loader bug fix to prevent dropping existing product data if
no new data is available (GCLP staging data not visible from seq farm
and other way around)
release 37.6.1
- update/fix tests to comply with ml_warehouse v1.5 and npg_tracking v84.7
release 37.6
- delay wh loader till the run is finished so that we have time to
update the number of lanes in the npg_tracking db
release 37.5.1
- DBIx batch insert does not work correctly, leaves some columns empty.
Reverted to per-row insert.
release 37.5
- a utility for repairing unset foreign keys from npg product table to
the flowcell table in the ml warehouse
- minimise time tables are locked for when loading data to the warehouse
- use fast batch insert mode
release 37.4
- fixed a bug in recognising an allowed error in lims data retrieval
release 37.3
- ml_warehouse driver for st::api::lims
- ml_warehouse loader - use common code for retrieving flowcell LIMs data from the database
release 37.2
- loader changes resulting from dropping most of autoqc columns from the run lane metrics
and removing from this table a foreign key into the flowcell table
- give preference to batch_id when linking to the flowcell table
- add explain flag for logging problems linking to tle flowcell table
- link as much data as possible for a flowcell with duplicate entries
- retrieve and load data for verify_bam_id check and for normal mode distribution
in the insert size check
release 37.1
- add run_is_indexed method to npg tracking data source
release 37.0
- the following modules
npg_warehouse::loader::autoqc
npg_warehouse::loader::npg
npg_warehouse::loader::qc
npg_warehouse::loader::run_status
were moved to this package from the SVN data-handling package (release 36.7).
- npg_warehouse::loader::run_status module was changed to accomodate
loading run statuses to the multi-lims (ml) schema defined in WTSI::DNAP::Warehouse::Schema
- initial version of the module (npg_warehous::loade::run) for loading the analysis data to
the ml warehouse
- initial version of scripts for loading run statuses and analysis data to the ml warehouse