This is the official development repository for samtools.
The original samtools package has been split into three separate but tightly coordinated projects:
- htslib: C-library for handling high-throughput sequencing data
- samtools: mpileup and other tools for handling SAM, BAM, CRAM
- bcftools: calling and other tools for handling VCF, BCF
See also http://github.com/samtools/