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Hello!
I recently installed salsa using mamba in the following environment: `# packages in environment at salsa2:
salsa
mamba
_libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 2_gnu conda-forge agptools 0.0.1 pypi_0 pypi bedtools 2.31.0 hf5e1c6e_2 bioconda boost-cpp 1.74.0 h75c5d50_8 conda-forge bz2file 0.98 pypi_0 pypi bzip2 1.0.8 h7f98852_4 conda-forge ca-certificates 2023.7.22 hbcca054_0 conda-forge certifi 2019.11.28 py27h8c360ce_1 conda-forge decorator 4.4.2 py_0 conda-forge icu 70.1 h27087fc_0 conda-forge ld_impl_linux-64 2.40 h41732ed_0 conda-forge libffi 3.2.1 he1b5a44_1007 conda-forge libgcc-ng 13.1.0 he5830b7_0 conda-forge libgomp 13.1.0 he5830b7_0 conda-forge libsqlite 3.42.0 h2797004_0 conda-forge libstdcxx-ng 13.1.0 hfd8a6a1_0 conda-forge libzlib 1.2.13 hd590300_5 conda-forge ncurses 6.4 hcb278e6_0 conda-forge networkx 1.11 py27_0 conda-forge openssl 1.1.1v hd590300_0 conda-forge pip 20.1.1 pyh9f0ad1d_0 conda-forge pyfaidx 0.7.1 pypi_0 pypi python 2.7.15 h5a48372_1011_cpython conda-forge python_abi 2.7 1_cp27mu conda-forge readline 8.2 h8228510_1 conda-forge salsa2 2.3 py27h16ec135_1 bioconda screed 1.0.4 pypi_0 pypi setuptools 44.0.0 py27_0 conda-forge six 1.16.0 pypi_0 pypi sqlite 3.42.0 h2c6b66d_0 conda-forge tk 8.6.12 h27826a3_0 conda-forge wheel 0.37.1 pyhd8ed1ab_0 conda-forge xz 5.2.6 h166bdaf_0 conda-forge zlib 1.2.13 hd590300_5 conda-forge zstd 1.5.2 hfc55251_7 conda-forge`
I managed to run salsa, but the scaffolds_FINAL.fasta seems to be a binary file. Is there any way to generate the fasta with the actual sequences?
scaffolds_FINAL.fasta
fasta
Thank you in advance for your time and help!
The text was updated successfully, but these errors were encountered:
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Hello!
I recently installed
salsa
usingmamba
in the following environment:`# packages in environment at salsa2:
Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
agptools 0.0.1 pypi_0 pypi
bedtools 2.31.0 hf5e1c6e_2 bioconda
boost-cpp 1.74.0 h75c5d50_8 conda-forge
bz2file 0.98 pypi_0 pypi
bzip2 1.0.8 h7f98852_4 conda-forge
ca-certificates 2023.7.22 hbcca054_0 conda-forge
certifi 2019.11.28 py27h8c360ce_1 conda-forge
decorator 4.4.2 py_0 conda-forge
icu 70.1 h27087fc_0 conda-forge
ld_impl_linux-64 2.40 h41732ed_0 conda-forge
libffi 3.2.1 he1b5a44_1007 conda-forge
libgcc-ng 13.1.0 he5830b7_0 conda-forge
libgomp 13.1.0 he5830b7_0 conda-forge
libsqlite 3.42.0 h2797004_0 conda-forge
libstdcxx-ng 13.1.0 hfd8a6a1_0 conda-forge
libzlib 1.2.13 hd590300_5 conda-forge
ncurses 6.4 hcb278e6_0 conda-forge
networkx 1.11 py27_0 conda-forge
openssl 1.1.1v hd590300_0 conda-forge
pip 20.1.1 pyh9f0ad1d_0 conda-forge
pyfaidx 0.7.1 pypi_0 pypi
python 2.7.15 h5a48372_1011_cpython conda-forge
python_abi 2.7 1_cp27mu conda-forge
readline 8.2 h8228510_1 conda-forge
salsa2 2.3 py27h16ec135_1 bioconda
screed 1.0.4 pypi_0 pypi
setuptools 44.0.0 py27_0 conda-forge
six 1.16.0 pypi_0 pypi
sqlite 3.42.0 h2c6b66d_0 conda-forge
tk 8.6.12 h27826a3_0 conda-forge
wheel 0.37.1 pyhd8ed1ab_0 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
zlib 1.2.13 hd590300_5 conda-forge
zstd 1.5.2 hfc55251_7 conda-forge`
I managed to run
salsa
, but thescaffolds_FINAL.fasta
seems to be a binary file. Is there any way to generate thefasta
with the actual sequences?Thank you in advance for your time and help!
The text was updated successfully, but these errors were encountered: