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details of assembly work #3

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nirvana693 opened this issue May 17, 2023 · 0 comments
Open

details of assembly work #3

nirvana693 opened this issue May 17, 2023 · 0 comments

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@nirvana693
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Hi @skoren,

As always amazing work!

as per the read me file -- "The assembly used [verkko](https://github.com/marbl/verkko) with manual assignment of nodes to chromosomes, ONT-based patching to resolve HiFi coverage gaps, manual resolution of tangles, and Strand-Seq and Hi-C based assignment of acrocentric short arms to chromosomes."

If I want to follow similar approach for an assembly, where I can find the details of these steps? ex: how the nodes were assigned to chromosome or how tangles in the graphs were resolved?

Thank you

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