CRAN check and test.yaml

on:
  push:
    branches: [main, master]
  pull_request:
    branches: [main, master]

name: CRAN check and test

jobs:
  CRAN-check-and-test:
    runs-on: ${{ matrix.config.os }}

    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          - {os: macOS-latest,   r: 'release'}
          - {os: windows-latest, r: 'release'}
          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
          - {os: ubuntu-latest,   r: 'release'}
          - {os: ubuntu-latest,   r: 'oldrel-1'}

    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      R_KEEP_PKG_SOURCE: yes

    steps:
      - uses: actions/checkout@v2

      - uses: r-lib/actions/setup-tinytex@v2

      - uses: r-lib/actions/setup-r@v2
        with:
          r-version: ${{ matrix.config.r }}
          http-user-agent: ${{ matrix.config.http-user-agent }}
          use-public-rspm: true

      - name: add TeX deps
        run: |
          install.packages('tinytex')
          tinytex::tlmgr_install("ae")
          tinytex::tlmgr_install("thumbpdf")
          tinytex::tlmgr_install("paralist")
          tinytex::tlmgr_install("pgf")
          tinytex::tlmgr_install("grfext")
        shell: Rscript {0}

      - uses: r-lib/actions/setup-pandoc@v1

      - name: Query dependencies
        run: |
          install.packages(c("devtools", "covr"))
          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
        shell: Rscript {0}

      - name: Cache R packages
        if: runner.os != 'Windows'
        uses: actions/cache@v2
        with:
          path: ${{ env.R_LIBS_USER }}
          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

      - name: Install system dependencies
        if: runner.os == 'Linux'
        run: |
          while read -r cmd
          do
            eval sudo $cmd
          done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')

      - name: Install dependencies
        run: |
          remotes::install_cran("rcmdcheck")
          devtools::install_deps(dependencies = TRUE)
          install.packages("TMB", type = "source")
          install.packages("glmmTMB", repos = "https://glmmTMB.github.io/glmmTMB/repos", type = "source")
          devtools::install_github("paul-buerkner/brms", build_vignettes = FALSE)
          devtools::install_github("lrberge/fixest")
          install.packages(c("AER", "alpaca", "Bergm", "bife", "biglm", "btergm", "dynlm", "eha", "ergm", "feisr", "forecast", "gamlss.inf", "lfe", "lme4", "maxLik", "metaSEM", "miceadds", "mlogit", "ordinal", "plm", "spatialreg", "speedglm", "truncreg"))
        shell: Rscript {0}

      - name: Check
        env:
          _R_CHECK_CRAN_INCOMING_REMOTE_: false
        run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", "--ignore-vignettes"), error_on = "error", check_dir = "check", build_args = c("--no-manual", "--no-build-vignettes"))
        shell: Rscript {0}

      - name: Upload check results
        if: failure()
        uses: actions/upload-artifact@main
        with:
          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
          path: check

      - name: Unit testing
        run: withr::with_envvar(c("NOT_CRAN" = "true"), devtools::test())
        shell: Rscript {0}

      - name: Test coverage
        run: withr::with_envvar(c("NOT_CRAN" = "true"), covr::codecov(quiet = FALSE))
        shell: Rscript {0}