bigscurate.pl

#!/usr/bin/env perl
#bigscurate.pl
#Written by Keith Jolley
#Copyright (c) 2010-2018, University of Oxford
#E-mail: keith.jolley@biology.ox.ac.uk
#
#This file is part of Bacterial Isolate Genome Sequence Database (BIGSdb).
#
#BIGSdb is free software: you can redistribute it and/or modify
#it under the terms of the GNU General Public License as published by
#the Free Software Foundation, either version 3 of the License, or
#(at your option) any later version.
#
#BIGSdb is distributed in the hope that it will be useful,
#but WITHOUT ANY WARRANTY; without even the implied warranty of
#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
#GNU General Public License for more details.
#
#You should have received a copy of the GNU General Public License
#along with BIGSdb.  If not, see <http://www.gnu.org/licenses/>.

use strict;
use warnings;
use 5.010;

###########Local configuration###############################################
use constant {
	CONFIG_DIR => '/etc/bigsdb',     
	LIB_DIR    => '/usr/local/lib',
	DBASE_CONFIG_DIR => '/etc/bigsdb/dbases',
};
#######End Local configuration###############################################

use Log::Log4perl qw(get_logger);    #Also need Log::Dispatch::File
use lib (LIB_DIR);
use BIGSdb::Curate;

my $r = shift;    #Apache request object (used for mod_perl)
Log::Log4perl->init_once(CONFIG_DIR . '/logging.conf');
BIGSdb::Curate->new( CONFIG_DIR, LIB_DIR,DBASE_CONFIG_DIR, $r, 1 );