requirements.lock

# generated by rye
# use `rye lock` or `rye sync` to update this lockfile
#
# last locked with the following flags:
#   pre: false
#   features: []
#   all-features: false
#   with-sources: false
#   generate-hashes: false
#   universal: false

-e file:.
adbc-driver-manager==1.2.0
    # via adbc-driver-sqlite
    # via polars
adbc-driver-sqlite==1.2.0
    # via polars
altair==5.4.1
    # via altair-tiles
    # via novotyper
    # via polars
    # via vegafusion
altair-tiles==0.3.0
    # via altair
annotated-types==0.7.0
    # via pydantic
anyio==4.6.0
    # via coconut
    # via starlette
anywidget==0.9.13
    # via altair
appdirs==1.4.4
    # via snakemake
argparse-dataclass==2.0.0
    # via snakemake-interface-common
    # via snakemake-interface-executor-plugins
asttokens==2.4.1
    # via stack-data
async-generator==1.10
    # via coconut
attrs==24.2.0
    # via cyclopts
    # via jsonschema
    # via referencing
babel==2.16.0
    # via great-tables
bioframe==0.7.2
    # via novotyper
certifi==2024.8.30
    # via requests
charset-normalizer==3.3.2
    # via requests
click==8.1.7
    # via marimo
    # via mercantile
    # via pyiceberg
    # via uvicorn
cloudpickle==3.0.0
    # via polars
coconut==3.1.2
    # via novotyper
comm==0.2.2
    # via ipykernel
    # via ipywidgets
commonmark==0.9.1
    # via great-tables
conda-inject==1.3.2
    # via snakemake
configargparse==1.7
    # via snakemake
    # via snakemake-interface-common
connection-pool==0.0.3
    # via snakemake
connectorx==0.3.3
    # via polars
contourpy==1.3.0
    # via matplotlib
cpyparsing==2.4.7.2.4.0
    # via coconut
cycler==0.12.1
    # via matplotlib
cyclopts==2.9.9
    # via novotyper
datrie==0.8.2
    # via snakemake
debugpy==1.8.6
    # via ipykernel
decorator==5.1.1
    # via ipython
deltalake==0.20.0
    # via polars
docstring-parser==0.16
    # via cyclopts
docutils==0.21.2
    # via marimo
    # via rich-rst
    # via snakemake
dpath==2.2.0
    # via snakemake
    # via yte
et-xmlfile==1.1.0
    # via openpyxl
executing==2.1.0
    # via stack-data
fastexcel==0.11.6
    # via polars
fastjsonschema==2.20.0
    # via nbformat
fonttools==4.54.1
    # via matplotlib
fsspec==2024.9.0
    # via polars
    # via pyiceberg
gevent==24.2.1
    # via polars
gitdb==4.0.11
    # via gitpython
gitpython==3.1.43
    # via snakemake
great-tables==0.11.1
    # via polars
greenlet==3.1.1
    # via gevent
    # via sqlalchemy
h11==0.14.0
    # via uvicorn
htmltools==0.5.3
    # via great-tables
humanfriendly==10.0
    # via snakemake
idna==3.10
    # via anyio
    # via requests
immutables==0.20
    # via snakemake
importlib-metadata==8.5.0
    # via great-tables
importlib-resources==6.4.5
    # via adbc-driver-sqlite
    # via great-tables
iniconfig==2.0.0
    # via pytest
ipykernel==6.29.5
    # via novotyper
ipython==8.27.0
    # via ipykernel
    # via ipywidgets
ipywidgets==8.1.5
    # via anywidget
itsdangerous==2.2.0
    # via marimo
jedi==0.19.1
    # via ipython
    # via marimo
jinja2==3.1.4
    # via altair
    # via snakemake
jsonschema==4.23.0
    # via altair
    # via nbformat
    # via snakemake
jsonschema-specifications==2023.12.1
    # via jsonschema
jupyter-client==8.6.3
    # via ipykernel
jupyter-core==5.7.2
    # via ipykernel
    # via jupyter-client
    # via nbformat
jupyterlab-widgets==3.0.13
    # via ipywidgets
kiwisolver==1.4.7
    # via matplotlib
marimo==0.8.20
    # via novotyper
markdown==3.7
    # via marimo
    # via pymdown-extensions
markdown-it-py==3.0.0
    # via rich
markupsafe==2.1.5
    # via jinja2
matplotlib==3.9.2
    # via bioframe
    # via polars
matplotlib-inline==0.1.7
    # via ipykernel
    # via ipython
mdurl==0.1.2
    # via markdown-it-py
mercantile==1.2.1
    # via altair-tiles
mmh3==4.1.0
    # via pyiceberg
mystmd==1.3.11
    # via novotyper
narwhals==1.8.3
    # via altair
natsort==8.4.0
    # via pyranges
nbformat==5.10.4
    # via novotyper
    # via snakemake
ncls==0.0.68
    # via pyranges
nest-asyncio==1.6.0
    # via ipykernel
    # via polars
nodeenv==1.9.1
    # via mystmd
numpy==1.26.4
    # via altair
    # via bioframe
    # via contourpy
    # via great-tables
    # via matplotlib
    # via ncls
    # via novotyper
    # via pandas
    # via polars
    # via pyarrow
    # via sorted-nearest
openpyxl==3.1.5
    # via polars
packaging==24.1
    # via altair
    # via htmltools
    # via ipykernel
    # via marimo
    # via matplotlib
    # via pytest
    # via snakemake
pandas==2.2.3
    # via adbc-driver-manager
    # via adbc-driver-sqlite
    # via altair
    # via bioframe
    # via novotyper
    # via polars
    # via pyranges
    # via vega-datasets
    # via vegafusion
parso==0.8.4
    # via jedi
pexpect==4.9.0
    # via ipython
pillow==10.4.0
    # via matplotlib
plac==1.4.3
    # via yte
platformdirs==4.2.2
    # via jupyter-core
    # via mystmd
pluggy==1.5.0
    # via pytest
polars==1.8.2
    # via novotyper
prompt-toolkit==3.0.47
    # via coconut
    # via ipython
protobuf==5.28.2
    # via vegafusion
psutil==6.0.0
    # via coconut
    # via ipykernel
    # via marimo
    # via snakemake
    # via vegafusion
psygnal==0.11.1
    # via anywidget
ptyprocess==0.7.0
    # via pexpect
pulp==2.8.0
    # via snakemake
pure-eval==0.2.3
    # via stack-data
pyarrow==17.0.0
    # via adbc-driver-manager
    # via adbc-driver-sqlite
    # via altair
    # via deltalake
    # via fastexcel
    # via polars
    # via vegafusion
pydantic==2.9.2
    # via polars
    # via pyiceberg
pydantic-core==2.23.4
    # via pydantic
pygments==2.18.0
    # via coconut
    # via ipython
    # via marimo
    # via rich
pyiceberg==0.7.1
    # via polars
pymdown-extensions==10.10.1
    # via marimo
pyparsing==3.1.4
    # via matplotlib
    # via pyiceberg
pyranges==0.1.2
    # via novotyper
pytest==8.3.3
    # via novotyper
python-dateutil==2.9.0.post0
    # via jupyter-client
    # via matplotlib
    # via pandas
    # via strictyaml
pytz==2024.2
    # via pandas
pyyaml==6.0.2
    # via bioframe
    # via conda-inject
    # via marimo
    # via pymdown-extensions
    # via snakemake
    # via yte
pyzmq==26.2.0
    # via ipykernel
    # via jupyter-client
referencing==0.35.1
    # via jsonschema
    # via jsonschema-specifications
requests==2.32.3
    # via bioframe
    # via pyiceberg
    # via snakemake
reretry==0.11.8
    # via snakemake
    # via snakemake-interface-storage-plugins
rich==13.8.1
    # via cyclopts
    # via pyiceberg
    # via rich-rst
rich-rst==1.3.1
    # via cyclopts
rpds-py==0.20.0
    # via jsonschema
    # via referencing
ruff==0.6.7
    # via marimo
setuptools==75.1.0
    # via coconut
    # via zope-event
    # via zope-interface
six==1.16.0
    # via asttokens
    # via python-dateutil
smart-open==7.0.4
    # via snakemake
smmap==5.0.1
    # via gitdb
snakemake==8.20.5
    # via novotyper
snakemake-interface-common==1.17.3
    # via snakemake
    # via snakemake-interface-executor-plugins
    # via snakemake-interface-report-plugins
    # via snakemake-interface-storage-plugins
snakemake-interface-executor-plugins==9.2.0
    # via snakemake
snakemake-interface-report-plugins==1.0.0
    # via snakemake
snakemake-interface-storage-plugins==3.3.0
    # via snakemake
sniffio==1.3.1
    # via anyio
sorted-nearest==0.0.39
    # via pyranges
sortedcontainers==2.4.0
    # via pyiceberg
sqlalchemy==2.0.35
    # via polars
stack-data==0.6.3
    # via ipython
starlette==0.39.0
    # via marimo
strictyaml==1.7.3
    # via pyiceberg
tabulate==0.9.0
    # via pyranges
    # via snakemake
tenacity==8.5.0
    # via pyiceberg
throttler==1.2.2
    # via snakemake
    # via snakemake-interface-executor-plugins
    # via snakemake-interface-storage-plugins
tomlkit==0.13.2
    # via marimo
toposort==1.10
    # via snakemake
tornado==6.4.1
    # via ipykernel
    # via jupyter-client
traitlets==5.14.3
    # via comm
    # via ipykernel
    # via ipython
    # via ipywidgets
    # via jupyter-client
    # via jupyter-core
    # via matplotlib-inline
    # via nbformat
typing-extensions==4.12.2
    # via adbc-driver-manager
    # via altair
    # via anywidget
    # via coconut
    # via cyclopts
    # via great-tables
    # via htmltools
    # via pydantic
    # via pydantic-core
    # via sqlalchemy
tzdata==2024.2
    # via pandas
urllib3==2.2.3
    # via requests
uvicorn==0.30.6
    # via marimo
vega-datasets==0.9.0
    # via altair
vegafusion==1.6.9
    # via altair
vegafusion-python-embed==1.6.9
    # via vegafusion
vl-convert-python==1.6.1
    # via altair
    # via vegafusion
wcwidth==0.2.13
    # via prompt-toolkit
websockets==12.0
    # via marimo
widgetsnbextension==4.0.13
    # via ipywidgets
wrapt==1.16.0
    # via smart-open
    # via snakemake
    # via snakemake-interface-storage-plugins
xlsx2csv==0.8.3
    # via polars
xlsxwriter==3.2.0
    # via polars
xyzservices==2024.9.0
    # via altair-tiles
yte==1.5.4
    # via snakemake
zipp==3.20.2
    # via importlib-metadata
zope-event==5.0
    # via gevent
zope-interface==7.0.3
    # via gevent