Merge pull request #146 from imsweb/lung-rule-bug-145

Lung rule bug
imsweb · Sep 30, 2024 · 1619b7e · 1619b7e
2 parents c49ce6a + 658e1e7
commit 1619b7e
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,5 +1,10 @@
 ## Multiple Primary and Histology Coding Rules Version History
 
+**Changes in version 1.36**
+
+- Fixed a bug in 2018 Lung rules Table 3 list.
+- Updated HematoDB data with latest data from SEER API.
+- 
 **Changes in version 1.35**
 
 - Fixed an exception happening in GroupUtility with invalid dates. The fix in previous version was not complete.

diff --git a/src/main/java/com/imsweb/mph/MphConstants.java b/src/main/java/com/imsweb/mph/MphConstants.java
@@ -736,16 +736,15 @@ private MphConstants() {
         content.put("8250/2", "8250/2");
         content.put("8260", "8260");
         content.put("8230", "8230");
+        content.put("8045", "8045");
+        content.put("8041", "8041");
+        content.put("8249", "8249");
         content.put("9043/3", "9043/3");
         content.put("9042/3", "9042/3");
         content.put("9137/3", "9137/3");
         content.put("8842/3", "8842/3");
         content.put("9041/3", "9041/3");
         content.put("9040/3", "9040/3");
-        content.put("8249/3", "8249/3");
-        content.put("8045/3", "8045/3");
-        content.put("8246/3", "8246/3");
-        content.put("8240/3", "8240/3");
         content.put("8083", "8083");
         content.put("8071", "8071");
         content.put("8072", "8072");
@@ -787,6 +786,11 @@ private MphConstants() {
         content.put("8720", "8720"); // Melanoma 8720
         content.put("8430", "8430"); // Mucoepidermoid carcinoma 8430
         content.put("8982", "8982"); // Myoepithelial carcinoma 8982
+        content.put("8246", "8246"); //Neuroendocrine carcinoma (NEC) 8246
+        content.put("8045", "8246"); //Neuroendocrine carcinoma (NEC) 8246
+        content.put("8041", "8246"); //Neuroendocrine carcinoma (NEC) 8246
+        content.put("8240", "8240"); //Neuroendocrine tumor, NOS (NET) 8240
+        content.put("8249", "8240"); //Neuroendocrine tumor, NOS (NET) 8240
         content.put("8023/3", "8023/3"); // NUT carcinoma 8023/3
         content.put("8714/3", "8714/3"); // PEComa malignant 8714/3
         content.put("8022", "8022"); // Pleomorphic carcinoma 8022
@@ -799,11 +803,6 @@ private MphConstants() {
         content.put("8842/3", "8800/3"); // Sarcoma NOS 8800/3
         content.put("9041/3", "8800/3"); // Sarcoma NOS 8800/3
         content.put("9040/3", "8800/3"); // Sarcoma NOS 8800/3
-        content.put("8041/3", "8041/3"); // Small cell carcinoma/neuroendocrine tumors (NET Tumors) 8041
-        content.put("8249/3", "8041/3"); // Small cell carcinoma/neuroendocrine tumors (NET Tumors) 8041
-        content.put("8045/3", "8041/3"); // Small cell carcinoma/neuroendocrine tumors (NET Tumors) 8041
-        content.put("8246/3", "8041/3"); // Small cell carcinoma/neuroendocrine tumors (NET Tumors) 8041
-        content.put("8240/3", "8041/3"); // Small cell carcinoma/neuroendocrine tumors (NET Tumors) 8041
         content.put("8032", "8032"); // Spindle cell carcinoma 8032
         content.put("8070", "8070"); // Squamous carcinoma 8070
         content.put("8083", "8070"); // Squamous carcinoma 8070

diff --git a/src/main/resources/Hematopoietic2010SamePrimaryPairs.csv b/src/main/resources/Hematopoietic2010SamePrimaryPairs.csv
@@ -691,20 +691,20 @@
 "9662/3","2001","2009","2001",,"9664/3"
 "9662/3","2001","2009","2001",,"9665/3"
 "9662/3","2001","2009","2001",,"9667/3"
-"9659/3","2001",,"2001",,"9590/3"
-"9659/3","2001",,"2001","2009","9596/3"
-"9659/3","2001",,"2001",,"9650/3"
-"9659/3","2001",,"2001",,"9651/3"
-"9659/3","2001",,"2001",,"9652/3"
-"9659/3","2001",,"2001",,"9653/3"
-"9659/3","2001",,"2001",,"9654/3"
-"9659/3","2001",,"2001",,"9655/3"
-"9659/3","2001",,"2001",,"9661/3"
-"9659/3","2001",,"2001",,"9662/3"
-"9659/3","2001",,"2001",,"9663/3"
-"9659/3","2001",,"2001",,"9664/3"
-"9659/3","2001",,"2001",,"9665/3"
-"9659/3","2001",,"2001",,"9667/3"
+"9659/3","1992",,"2001",,"9590/3"
+"9659/3","1992",,"2001","2009","9596/3"
+"9659/3","1992",,"2001",,"9650/3"
+"9659/3","1992",,"2001",,"9651/3"
+"9659/3","1992",,"2001",,"9652/3"
+"9659/3","1992",,"2001",,"9653/3"
+"9659/3","1992",,"2001",,"9654/3"
+"9659/3","1992",,"2001",,"9655/3"
+"9659/3","1992",,"2001",,"9661/3"
+"9659/3","1992",,"2001",,"9662/3"
+"9659/3","1992",,"2001",,"9663/3"
+"9659/3","1992",,"2001",,"9664/3"
+"9659/3","1992",,"2001",,"9665/3"
+"9659/3","1992",,"2001",,"9667/3"
 "9675/3","2001","2009","2001",,"9590/3"
 "9675/3","2001","2009","2001",,"9591/3"
 "9675/3","2001","2009","2001","2009","9596/3"

diff --git a/src/main/resources/Hematopoietic2010TransformFromPairs.csv b/src/main/resources/Hematopoietic2010TransformFromPairs.csv
@@ -21,8 +21,8 @@
 "9651/3","1978",,"2010",,"9761/3"
 "9652/3","2001",,"2010",,"9671/3"
 "9652/3","2001",,"2010",,"9761/3"
-"9659/3","2001",,"2010",,"9671/3"
-"9659/3","2001",,"2010",,"9761/3"
+"9659/3","1992",,"2010",,"9671/3"
+"9659/3","1992",,"2010",,"9761/3"
 "9655/3","2001",,"2010",,"9671/3"
 "9655/3","2001",,"2010",,"9761/3"
 "9867/3","2001",,"2010",,"9875/3"

diff --git a/src/main/resources/Hematopoietic2010TransformToPairs.csv b/src/main/resources/Hematopoietic2010TransformToPairs.csv
@@ -102,7 +102,7 @@
 "9962/3","2001",,"2010",,"9897/3"
 "9962/3","2001",,"2010",,"9910/3"
 "9962/3","2001",,"2010",,"9911/3"
-"9659/3","2001",,"2010",,"9680/3"
+"9659/3","1992",,"2010",,"9680/3"
 "9698/3","2001",,"2010",,"9680/3"
 "9653/3","2001",,"2010",,"9680/3"
 "9671/3","2001",,"2010",,"9650/3"

diff --git a/src/main/resources/hemato_data_info.properties b/src/main/resources/hemato_data_info.properties
@@ -1,2 +1,2 @@
-#Mon Jan 08 09:11:15 EST 2024
-last_updated=202401080911
+#Mon Sep 30 14:46:05 EDT 2024
+last_updated=202409301446
diff --git a/src/test/java/com/imsweb/mph/Mph2018RuleTests.java b/src/test/java/com/imsweb/mph/Mph2018RuleTests.java
@@ -2642,8 +2642,8 @@ public void test2018Lung() {
         Assert.assertEquals(ruleCountToTest, output.getAppliedRules().size());
         Assert.assertTrue(output.getReason().contains("two or more different subtypes/variants in Column 3, Table 3"));
         Assert.assertEquals(ruleStepToTest, output.getStep());
-        i1.setHistologyIcdO3("8246");
-        i2.setHistologyIcdO3("8249");
+        i1.setHistologyIcdO3("8045");
+        i2.setHistologyIcdO3("8041");
         i1.setBehaviorIcdO3("3");
         i2.setBehaviorIcdO3("3");
         output = _utils.computePrimaries(i1, i2);
@@ -2724,6 +2724,13 @@ public void test2018Lung() {
         i2.setHistologyIcdO3("8083");
         output = _utils.computePrimaries(i1, i2);
         Assert.assertNotEquals(ruleStepToTest, output.getStep());
+        // Small cell carcinoma 8041/3 row: “Neuroendocrine carcinoma, NOS” removed from beneath Typical Carcinoid 8240/3 and added as its own subtype/variant with the code 8246/3
+        i1.setHistologyIcdO3("8041");
+        i2.setHistologyIcdO3("8240");
+        i1.setBehaviorIcdO3("3");
+        i2.setBehaviorIcdO3("3");
+        output = _utils.computePrimaries(i1, i2);
+        Assert.assertNotEquals(ruleStepToTest, output.getStep());
         //Histologies not in table->
         i1.setHistologyIcdO3("8000");
         i2.setHistologyIcdO3("8002");
@@ -2788,7 +2795,7 @@ public void test2018Lung() {
         Assert.assertNotEquals(ruleStepToTest, output.getStep());
         // Does not apply.
         i1.setHistologyIcdO3("8041");
-        i2.setHistologyIcdO3("8240");
+        i2.setHistologyIcdO3("8246");
         output = _utils.computePrimaries(i1, i2);
         Assert.assertNotEquals(ruleStepToTest, output.getStep());