Move LOGOS from GitLab Repo to GitHub Repo

.gitignore

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+*.libs
+*.dylib
+*.la
+*.lo
+*.d
+*.o
+*.a
+*.e
+*.csv
+*.so
+*.aux
+*.bbl
+*.blg
+*.log
+*.out
+*.toc
+*.png
+
+#osx
+.DS_Store
+
+# python
+*.pyc
+*.pyo
+
+# vim
+*~
+*.swp
+

.gitlab-ci.yml

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+before_script:
+      # Print out python version for debugging
+    - python -V
+      # clone raven
+    - git clone https://github.com/idaholab/raven.git
+    - cd raven
+      # we technically still need moose for running the tests, currently
+    - git checkout master
+    - git clean -xfd
+      # check that we have conda
+    - if which conda 2> /dev/null; then
+        echo "Conda found!";
+        conda update conda;
+      else
+        echo "ERROR Conda not found!";
+        exit 404;
+      fi
+      # install plugins before establish conda so plugin libraries get installed
+    - git submodule update --init plugins/TEAL/
+    - cd scripts
+    - python install_plugins.py -s `pwd`/../../
+    - python install_plugins.py -s `pwd`/../plugins/TEAL/
+    - cd ..
+      # create libraries or create them
+    - ./scripts/establish_conda_env.sh --install --conda-defs $HOME/miniconda2/etc/profile.d/conda.sh
+    - ./build_raven
+      # return to project path main dir
+    - cd ..
+
+
+user_manual:
+  script:
+    - cd doc/user_manual/
+    - make
+    - cd ../../
+  artifacts:
+    paths:
+    - doc/user_manual/user_manual.pdf
+
+sqa:
+  script:
+    - cd doc/sqa/
+    - ./make_docs.sh
+    - cd ../../
+  artifacts:
+    paths:
+    - doc/sqa/sqa_built_documents/
+
+test:
+    script:
+      - cd raven
+      - ./run_tests -j4 --plugins --re=LOGOS/tests

.gitlab/issue_templates/ISSUE_TEMPLATE.md

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+--------
+Issue Description
+--------
+##### Please describe your issue here.
+
+
+
+
+----------------
+For Change Control Board: Issue Review
+----------------
+This review should occur before any development is performed as a response to this issue.
+- [ ] 1. Is it tagged with a type: defect or task?
+- [ ] 2. Is it tagged with a priority: critical, normal or minor?
+- [ ] 3. If it is a defect, can it cause wrong results for users? If so a detailed description should be provided.
+- [ ] 4. Is a rationale provided? (Such as explaining why the task is needed or why current code is wrong.)
+
+-------
+For Change Control Board: Issue Closure
+-------
+This review should occur when the issue is imminently going to be closed.
+- [ ] 1. If the issue is a defect, is the defect fixed?
+- [ ] 2. If the issue is a defect, is the defect tested for in the regression test system?  (If not explain why not.)
+- [ ] 3. If the issue can impact users, has the detailed description been written?
+- [ ] 4. If the issue is being closed without a merge request, has an explanation of why it is being closed been provided?

.gitlab/merge_request_templates/PULL_REQUEST_TEMPLATE.md

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+--------
+Pull Request Description
+--------
+##### What issue does this change request address? (Use "#" before the issue to link it, i.e., #42.)
+
+
+##### What are the significant changes in functionality due to this change request?
+
+
+----------------
+For Change Control Board: Change Request Review
+----------------
+The following review must be completed by an authorized member of the Change Control Board.
+- [ ] 1. Review all computer code.
+- [ ] 2. If any changes occur to the input syntax, there must be an accompanying change to the user manual.
+- [ ] 3. Make sure the Python code and commenting standards are respected (camelBack, etc.) - See on the [wiki](https://github.com/idaholab/raven/wiki/RAVEN-Code-Standards#python) for details.
+- [ ] 4. Regression tests have to complete successfully.
+- [ ] 5. If significant functionality is added, there must be tests added to check this. Tests should cover all possible options.  Multiple short tests are preferred over one large test.
+- [ ] 6. The merge request must reference an issue.  If the issue is closed, the issue close checklist shall be done.

NOTICE.txt

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+This project contains code from Idaho National Laboratory's LOGOS Project
+Github URL :  idaholab/LOGOS
+
+Licensed under Apache License.
+
+
+© 2020 Battelle Energy Alliance, LLC
+ALL RIGHTS RESERVED
+
+Prepared by Battelle Energy Alliance, LLC
+Under Contract No. DE-AC07-05ID14517
+With the U. S. Department of Energy
+
+NOTICE:  This computer software was prepared by Battelle Energy
+Alliance, LLC, hereinafter the Contractor, under Contract
+No. AC07-05ID14517 with the United States (U. S.) Department of
+Energy (DOE).  The Government is granted for itself and others acting on
+its behalf a nonexclusive, paid-up, irrevocable worldwide license in this
+data to reproduce, prepare derivative works, and perform publicly and
+display publicly, by or on behalf of the Government. There is provision for
+the possible extension of the term of this license.  Subsequent to that
+period or any extension granted, the Government is granted for itself and
+others acting on its behalf a nonexclusive, paid-up, irrevocable worldwide
+license in this data to reproduce, prepare derivative works, distribute
+copies to the public, perform publicly and display publicly, and to permit
+others to do so.  The specific term of the license can be identified by
+inquiry made to Contractor or DOE.  NEITHER THE UNITED STATES NOR THE UNITED
+STATES DEPARTMENT OF ENERGY, NOR CONTRACTOR MAKES ANY WARRANTY, EXPRESS OR
+IMPLIED, OR ASSUMES ANY LIABILITY OR RESPONSIBILITY FOR THE USE, ACCURACY,
+COMPLETENESS, OR USEFULNESS OR ANY INFORMATION, APPARATUS, PRODUCT, OR
+PROCESS DISCLOSED, OR REPRESENTS THAT ITS USE WOULD NOT INFRINGE PRIVATELY
+OWNED RIGHTS.
+
+Authors:
+Diego Mandelli
+Congjian Wang
+

README.md

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+# Logos: Operation Optimization Toolkit
+
+LOGOS is a software package which contains a set of discrete optimization models
+that can be employed for capital budgeting optimization problems. More specifically,
+provided a set of items (characterized by cost and reward values) and constraints,
+these models select the best combination of items which maximizes overall reward
+and satisfies the provided constraints. The developed models are based on different
+versions of the knapsack optimization algorithms. Two main classes of optimization
+models have been initially developed: deterministic and stochastic. Stochastic
+optimization models evolve deterministic models by explicitly considering data
+uncertainties (associated to constraints or item cost and reward). These models
+can be employed as stand-alone models or interfaced with the INL developed RAVEN
+code to propagate data uncertainties and analyze the generated data
+(i.e., sensitivity analysis).
+
+## Optimization for Capital Investments
+
+### Problems that can be solved by this package:
+- Deterministic Capital Budgeting
+- Risk-informed stochastic Capital Budgeting
+- Multiple Knapsack problem optimization
+- Multi-dimensional Knapsack problem optimization
+- Multi-choice Knapsack problem optimization
+- Multi-choice multi-dimensional Knapsack problem optimization
+- SSC cashflow and NPV models
+
+## Installation:
+path/to/LOGOS/build.sh --install
+
+## How to run:
+- source activate LOGOS_libraries
+- path/to/LOGOS/.logos -i inputfile.xml -o outputfile.csv
+
+## Tests
+python run_tests.py
+
+## Docs
+path/to/LOGOS/doc
+
+### Other Software
+Idaho National Laboratory is a cutting edge research facility which is a constantly producing high quality research and software. Feel free to take a look at our other software and scientific offerings at:
+
+[Primary Technology Offerings Page](https://www.inl.gov/inl-initiatives/technology-deployment)
+
+[Supported Open Source Software](https://github.com/idaholab)
+
+[Raw Experiment Open Source Software](https://github.com/IdahoLabResearch)
+
+[Unsupported Open Source Software](https://github.com/IdahoLabCuttingBoard)
+
+
+### Licensing
+-----
+This software is licensed under the terms you may find in the file named "LICENSE" in this directory.
+
+### Developers
+-----
+By contributing to this software project, you are agreeing to the following terms and conditions for your contributions:
+
+You agree your contributions are submitted under the Apache license. You represent you are authorized to make the contributions and grant the license. If your employer has rights to intellectual property that includes your contributions, you represent that you have received permission to make contributions and grant the required license on behalf of that employer.

__init__.py

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+# Copyright 2020, Battelle Energy Alliance, LLC
+# ALL RIGHTS RESERVED
+"""
+Created on Nov. 18, 2019
+@author: wangc, mandd
+"""
+
+from LOGOS.src import CapitalInvestmentModel
+from LOGOS.src import BatteryReplacementCashFlowModel
+from LOGOS.src import IncrementalNPV