references.md

References

Molecular Simulation

• Basic molecular dynamics

• CHARMM: A theoretical introduction to molecular dynamics simulations and practical examples

  This site has a basic introduction to the physics of molecular dynamics simulations, and practical exercises with the CHARMM package

• Thermostat Algorithms for Molecular Dynamics Simulations

• the "flying ice cube"

  One kind of unphysical effect that can arise. See linked paper.

• SklogWiki: Lennard-Jones

Courses

• CHE 800-002: Molecular Simulation Cameron Abrams Department of Chemical Engineering at Drexel

• Computational Physics

• Benchmark results for Lennard-Jones fluid

• Statistical Physics and Simulation

Reduced Units

• softmatter:Simulation Variables/Units
• An MD Code for the Lennard-Jones Fluid
• 2.4 Reduced Units
• Understanding molecular simulation: from algorithms to applications
• Molecular Dynamics Simulation: Nneoma Ogbonna

Full Screen API

• JavaScript Full Screen API, Navigation Timing and repeating CSS Gradients
• Fullscreen API, enhanced Element Highlighting and progress on Flexbox
• Native Fullscreen JavaScript API (plus jQuery plugin)
• Gecko:FullScreenAPI
• Mozilla full-screen API progress update
• fullscreen API coming to browsers near you?
• Full Screen Demos
• stackoverflow: Chrome Fullscreen API