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ModelZ is a tool for assessing how well structural features are resolved in 3D density maps from Cryo-EM.

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modelz

To Install:

  1. First, download and install UCSF Chimera.
  • Run it once before installing the plugin; on some platforms, e.g. MacOS, you may see a warning message on first run which you have to accept. This may prevent further issues after adding the plugin.
  • On Windows, install to your home folder rather than to "Program Files". In the latter, the OS may not allow further modifications at a user level, i.e. adding this plugin.
  1. Download latest version of ModelZ.
  2. In a terminal, navigate to where the file was downloaded, then execute the following commands:
  • unzip modelz_chimera_1_2.zip
  • cd modelz_chimera_1_2
  • python install.py [path to Chimera]

e.g.:

  • python install.py ~/Desktop/Chimera.app/

Note that on Windows, you may use the python bundled with Chimera itself, so the third command would be

  • [path to Chimera]\bin\python install.py [path to Chimera]

To Run:

  1. (Re)start Chimera
  • On Mac OS, an error message may be shown on first run after installing, see here for solution.
  1. Start ModelZ: Tools -> Volume Data -> ModelZ
  2. See more details and tutorials

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ModelZ is a tool for assessing how well structural features are resolved in 3D density maps from Cryo-EM.

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